Rroxscaffold_4G00310540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
32558074 .. 32562526
4453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310540.1

Sequence Viewer

Length: 249 bp
ATGATCGGAGGAGAGATGGCTTCATCACTATTCACCCCACTCTCAATCTACGGTTCATATAAAAGGAGAAAAGGGAAAGAGGAGCAGAGCAAATTGAAACCCAGAAAGAGGAAAAAATTGGTATCAAAATCGGTGATTGCAGATAAGATTACCGCTGTTAGCTTCAGTTCAGTTGGTTCACTAGAAGAGCTGGTAGGTAATAGAAACATTGGAGCAGACAGTGTTGCAGATTCACTTGAGGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.91

Weight (kDa)

9.7

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 148
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 2 cut(s) 162, 190
AluI AGCT 2 cut(s) 162, 190
AsuHPI GGTGA 2 cut(s) 25, 145
BccI CCATC 1 cut(s) 10
BfaI CTAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 2 cut(s) 24, 95
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 180
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 53, 221
Bst6I CTCTTC 1 cut(s) 180
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BtsIMutI CAGTG 1 cut(s) 226
CviJI RGCY 3 cut(s) 20, 162, 190
CviKI_1 RGCY 3 cut(s) 20, 162, 190
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 148
FaiI YATR 2 cut(s) 58, 60
FspBI CTAG 1 cut(s) 182
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 25, 145
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 53, 221
HpyCH4V TGCA 2 cut(s) 140, 227
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 82, 212
LpnPI CCDG 2 cut(s) 115, 176
MaeI CTAG 1 cut(s) 182
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 197
MluCI AATT 2 cut(s) 92, 116
MnlI CCTC 3 cut(s) 73, 102, 232
MspA1I CMGCKG 1 cut(s) 155
NdeII GATC 1 cut(s) 3
PciSI GCTCTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 3
SetI ASST 3 cut(s) 164, 192, 199
SgeI CNNG 3 cut(s) 114, 194, 203
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 92, 116
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 2 cut(s) 53, 221
TasI AATT 2 cut(s) 92, 116
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 12, 45
TspRI CASTG 1 cut(s) 226
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.