Rh5DG037000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
2735614 .. 2736112
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG037000.1

Sequence Viewer

Length: 285 bp
ATGATCGGAGGAGAGATGGCTTCATCACTATTCACCCCACTCTCAATCTACGGTTCATATAAAAGGAGAAAAGGGAAAGAGGAGCAGAGCAAATTCAAACCCAGAAAGAGGAAAAAATTGGTATCAAAATCGGTGATTGCAGATAAGATTACCGCTGTTAGGTATTGTGTGCAGAGTGGATTCTCAATCAAACCCAAAAGGCAGAGTAAAATAGGTGTAACTCGGGCGAAAGAGTGGCAGATTCAGTGGAGTGGGTGGTTACCAGAAGTTGCTCATGACCTCTTC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

10.37

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 92
AfiI CCNNNNNNNGG 2 cut(s) 108, 159
AgsI TTSAA 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 222
ApoI RAATTY 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 25, 145
AvaI CYCGRG 1 cut(s) 222
BccI CCATC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 159
BseLI CCNNNNNNNGG 2 cut(s) 108, 159
BseRI GAGGAG 2 cut(s) 24, 95
BsgI GTGCAG 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 108, 159
BsoBI CYCGRG 1 cut(s) 222
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 153
BspHI TCATGA 1 cut(s) 274
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 53
BstEII GGTNACC 1 cut(s) 258
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstPI GGTNACC 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 251
CciI TCATGA 1 cut(s) 274
CviAII CATG 1 cut(s) 275
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco88I CYCGRG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 258
FaeI CATG 1 cut(s) 278
FaiI YATR 3 cut(s) 58, 60, 276
FatI CATG 1 cut(s) 274
Hin1II CATG 1 cut(s) 278
HinfI GANTC 2 cut(s) 180, 241
HphI GGTGA 2 cut(s) 25, 145
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 1 cut(s) 275
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 140, 172
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 115, 276
MaeIII GTNAC 2 cut(s) 217, 258
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 274
MluCI AATT 2 cut(s) 92, 116
MnlI CCTC 2 cut(s) 73, 102
MspA1I CMGCKG 1 cut(s) 155
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 278
PagI TCATGA 1 cut(s) 274
PfeI GAWTC 2 cut(s) 180, 241
PspEI GGTNACC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 3
SetI ASST 3 cut(s) 164, 217, 282
SgeI CNNG 4 cut(s) 114, 234, 236, 275
Sse9I AATT 2 cut(s) 92, 116
SsiI CCGC 1 cut(s) 153
TaaI ACNGT 1 cut(s) 53
TasI AATT 2 cut(s) 92, 116
TfiI GAWTC 2 cut(s) 180, 241
TscAI CASTG 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 12, 45
TspRI CASTG 1 cut(s) 251
XapI RAATTY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.