Rh1DG293700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
51872798 .. 51875938
3141 bp
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UTR
Exon/CDS
Intron
Rh1DG293700.1

Sequence Viewer

Length: 381 bp
ATGGAGGCAGAGACTCAGGACGACGTGGGAATTCAAATGTATACATCAACACTAATCCGTCTTCCAATTCCCAGTTCACACGAAAATAGAAAACAAATAAAGAATGAAGAGCAGCGCAGAATCAAACCCAAAAGGAGGAGAAAATTCTTATCAAATCGGCTTAGGTCAGACTTGATAATTGTCATTGGGCGGACGTGGGAGATGATCGGAGTGGATATGGCTTCCTCACTATTCACCCCACTCTCAATTTACGGTTCATATAAAAGGAGAGAAGGGAAAGAGGAGCAGAGCAAAATCAAACCCAGAAAGAGGAAAAAATTAGAAGCAAAATCGGTATTGTGGGCAGAGTGGATTCTCAATCAAACCCAAAAGGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.94

Weight (kDa)

10.24

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 41
AciI CCGC 1 cut(s) 190
AcsI RAATTY 2 cut(s) 30, 143
AfiI CCNNNNNNNGG 2 cut(s) 135, 309
AgsI TTSAA 1 cut(s) 35
AjiI CACGTC 2 cut(s) 25, 195
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
Alw26I GTCTC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 2 cut(s) 30, 143
AspLEI GCGC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 5
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmgBI CACGTC 2 cut(s) 25, 195
BmrI ACTGGG 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 53
Bpu10I CCTNAGC 1 cut(s) 161
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 309
Bse1I ACTGG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 135, 309
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 151, 296
BseXI GCAGC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 135, 309
BsmAI GTCTC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 204
BspACI CCGC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 72
BssMI GATC 1 cut(s) 204
BssNAI GTATAC 1 cut(s) 42
Bst1107I GTATAC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 15, 161
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 53
BstZ17I GTATAC 1 cut(s) 42
BtrI CACGTC 2 cut(s) 25, 195
CfoI GCGC 1 cut(s) 117
CviJI RGCY 2 cut(s) 160, 221
CviKI_1 RGCY 2 cut(s) 160, 221
DdeI CTNAG 2 cut(s) 15, 161
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EciI GGCGGA 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 30
FaiI YATR 4 cut(s) 42, 218, 259, 261
FblI GTMKAC 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 113
Fsp4HI GCNGC 1 cut(s) 113
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 117
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 3 cut(s) 13, 120, 352
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 42, 77
Hpy188I TCNGA 2 cut(s) 169, 209
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 2 cut(s) 42, 77
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 2 cut(s) 24, 194
HpyF3I CTNAG 2 cut(s) 15, 161
HpySE526I ACGT 2 cut(s) 24, 194
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 3 cut(s) 2, 85, 316
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 2 cut(s) 24, 194
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 53, 119
MluCI AATT 6 cut(s) 30, 66, 143, 177, 246, 317
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 4 cut(s) 129, 235, 274, 303
NdeII GATC 1 cut(s) 204
PciSI GCTCTTC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 120, 352
PkrI GCNGC 1 cut(s) 114
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
SapI GCTCTTC 1 cut(s) 102
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 204
SchI GAGTC 1 cut(s) 7
SetI ASST 3 cut(s) 27, 167, 197
SgeI CNNG 7 cut(s) 29, 37, 84, 92, 184, 207, 315
Sse9I AATT 6 cut(s) 30, 66, 143, 177, 246, 317
SsiI CCGC 1 cut(s) 190
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 2 cut(s) 27, 197
TasI AATT 6 cut(s) 30, 66, 143, 177, 246, 317
TfiI GAWTC 2 cut(s) 120, 352
TseI GCWGC 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 120, 246
TspGWI ACGGA 1 cut(s) 47
XapI RAATTY 2 cut(s) 30, 143
XmiI GTMKAC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.