Rroxscaffold_7G00156880

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
786245 .. 790294
4050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156880.1

Sequence Viewer

Length: 267 bp
ATGATCGGAGTAGATATGGCTTCATCACTATTCACCCCACTCTCAATTTACGGTTCATATAAAAGGAGGGAAGGGAAAGAGGAGCAGAGCAAAATCAAACCCAGAAAGAGGAAGAAATTAGTACCAAAATCGGTGATTCTAGATTCACCTAGCCAATTGTTATTGGGTACTTTGTCTGCAGAGCGGATTCTCGATCAAACTAGAAACGCAGAGAAAGTATGGAGGAACTCGGTTGATAGTGTTGCTAATTCACTGGAGGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.92

Weight (kDa)

9.75

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 1 cut(s) 184
AfaI GTAC 2 cut(s) 123, 169
AfiI CCNNNNNNNGG 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 25, 138, 145
BfaI CTAG 3 cut(s) 140, 150, 201
BfmI CTRYAG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 2 cut(s) 3, 193
BspACI CCGC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 258
BssMI GATC 2 cut(s) 3, 193
Bst4CI ACNGT 1 cut(s) 53
BstKTI GATC 2 cut(s) 6, 196
BstMBI GATC 2 cut(s) 3, 193
BstSFI CTRYAG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 251
Csp6I GTAC 2 cut(s) 122, 168
CviJI RGCY 2 cut(s) 20, 153
CviKI_1 RGCY 2 cut(s) 20, 153
CviQI GTAC 2 cut(s) 122, 168
DpnI GATC 2 cut(s) 5, 195
DpnII GATC 2 cut(s) 3, 193
FaiI YATR 4 cut(s) 17, 58, 60, 220
FspBI CTAG 3 cut(s) 140, 150, 201
HinfI GANTC 3 cut(s) 136, 143, 187
HphI GGTGA 3 cut(s) 25, 138, 145
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 140, 191
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 179
Kzo9I GATC 2 cut(s) 3, 193
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 115, 239
MaeI CTAG 3 cut(s) 140, 150, 201
MalI GATC 2 cut(s) 5, 195
MbiI CCGCTC 1 cut(s) 184
MboI GATC 2 cut(s) 3, 193
MboII GAAGA 1 cut(s) 124
MfeI CAATTG 1 cut(s) 155
MluCI AATT 4 cut(s) 45, 116, 155, 247
MnlI CCTC 5 cut(s) 60, 73, 102, 216, 250
MseI TTAA 1 cut(s) 265
MunI CAATTG 1 cut(s) 155
NdeII GATC 2 cut(s) 3, 193
PfeI GAWTC 3 cut(s) 136, 143, 187
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 2 cut(s) 123, 169
RsaNI GTAC 2 cut(s) 122, 168
SaqAI TTAA 1 cut(s) 265
Sau3AI GATC 2 cut(s) 3, 193
SetI ASST 1 cut(s) 151
SfcI CTRYAG 1 cut(s) 177
SgeI CNNG 6 cut(s) 114, 152, 162, 203, 213, 241
Sse9I AATT 4 cut(s) 45, 116, 155, 247
SsiI CCGC 1 cut(s) 184
SspMI CTAG 3 cut(s) 140, 150, 201
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 192
TasI AATT 4 cut(s) 45, 116, 155, 247
TfiI GAWTC 3 cut(s) 136, 143, 187
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 12, 45
TspRI CASTG 1 cut(s) 258
XbaI TCTAGA 1 cut(s) 139
XspI CTAG 3 cut(s) 140, 150, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.