Rroxscaffold_1G00004870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
6640477 .. 6644519
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004870.1

Sequence Viewer

Length: 297 bp
ATGATCGGAGTAGATATGGCTTCATCACCATTCACCCCACTGTCAATTTACGGTTCATATAAAAGGAGCGAAGGGAAAGAGGAGCAGAGCAAAATCAAACCCAGAAAGAGGAAGAAATTAGTACCAAAATCGGTGATTCCAGATTCACCTAGCCAATTGTTATTGGGTACTTTGTCTGCAGAGCGGATTCTTGATCAAACCAGAAACGCAGAGAATGTATGGAGGAACTCGGTTGACAGTGCTGCTAATTCACTTGAGCTTCAGTTCAGTTGGTTCACTAGAAGAGCTGGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.05

Weight (kDa)

10.15

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 184
AciI CCGC 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 2 cut(s) 123, 169
AfiI CCNNNNNNNGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 259, 287
AluI AGCT 2 cut(s) 259, 287
ApeKI GCWGC 1 cut(s) 242
AsuHPI GGTGA 4 cut(s) 18, 25, 138, 145
BbvI GCAGC 1 cut(s) 229
BclI TGATCA 1 cut(s) 193
BfaI CTAG 2 cut(s) 150, 279
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 2 cut(s) 3, 193
BspACI CCGC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 184
BssMI GATC 2 cut(s) 3, 193
Bst4CI ACNGT 3 cut(s) 42, 53, 239
Bst6I CTCTTC 1 cut(s) 277
BstKTI GATC 2 cut(s) 6, 196
BstMBI GATC 2 cut(s) 3, 193
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 38, 244
Csp6I GTAC 2 cut(s) 122, 168
CviJI RGCY 4 cut(s) 20, 153, 259, 287
CviKI_1 RGCY 4 cut(s) 20, 153, 259, 287
CviQI GTAC 2 cut(s) 122, 168
DpnI GATC 2 cut(s) 5, 195
DpnII GATC 2 cut(s) 3, 193
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Eco57I CTGAAG 1 cut(s) 245
FaiI YATR 4 cut(s) 17, 58, 60, 220
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 2 cut(s) 150, 279
GluI GCNGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 3 cut(s) 136, 143, 187
HphI GGTGA 4 cut(s) 18, 25, 138, 145
Hpy166II GTNNAC 2 cut(s) 235, 276
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 2 cut(s) 140, 191
Hpy8I GTNNAC 2 cut(s) 235, 276
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 42, 53, 239
HpyCH4V TGCA 1 cut(s) 179
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 3, 193
LguI GCTCTTC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 66, 82
LpnPI CCDG 4 cut(s) 115, 153, 214, 273
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 2 cut(s) 150, 279
MalI GATC 2 cut(s) 5, 195
MbiI CCGCTC 1 cut(s) 184
MboI GATC 2 cut(s) 3, 193
MboII GAAGA 2 cut(s) 124, 294
MfeI CAATTG 1 cut(s) 155
MluCI AATT 4 cut(s) 45, 116, 155, 247
MnlI CCTC 3 cut(s) 73, 102, 216
MunI CAATTG 1 cut(s) 155
NdeII GATC 2 cut(s) 3, 193
PciSI GCTCTTC 1 cut(s) 277
PfeI GAWTC 3 cut(s) 136, 143, 187
PkrI GCNGC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 2 cut(s) 123, 169
RsaNI GTAC 2 cut(s) 122, 168
SapI GCTCTTC 1 cut(s) 277
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 3, 193
SetI ASST 4 cut(s) 151, 261, 289, 296
SfcI CTRYAG 1 cut(s) 177
SgeI CNNG 8 cut(s) 114, 152, 162, 203, 213, 241, 266, 291
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 45, 116, 155, 247
SsiI CCGC 1 cut(s) 184
SspMI CTAG 2 cut(s) 150, 279
TaaI ACNGT 3 cut(s) 42, 53, 239
TasI AATT 4 cut(s) 45, 116, 155, 247
TfiI GAWTC 3 cut(s) 136, 143, 187
TscAI CASTG 2 cut(s) 45, 244
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 12, 45
TspRI CASTG 2 cut(s) 45, 244
XspI CTAG 2 cut(s) 150, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.