Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003177.1

Orthogroup ID

OG0008896

Physical Location & Seq

Genomic Coordinates Reverse (-)

69101 .. 70110

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003177.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgctcaagacgacgtgggagttgatcgaagtacaaatggatgcattagtactccttcctcttccaatttacagttcatgcgaacgtagaaaacaaacacagaaagaagaacagagcagaatcaaatccagaaggagtagagaaacaaaaaatcggctgacagtttgcagacttgataattgccattggctccgattgttagaggctttgggaagtgtggagtgtggactattgtatttggctgagcctgagtgtctttgtgaacctgatcatgagccttttgtgttgactgtaagaggagggtgcagttttgaggagaaggctagaagagctcaaaagcctgggttcaaagctgcaattgtctacgacaatgaagagggcggcgtcttagtttcaggtaatggcctttctactgtaaaacttttatgcgtagtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000209 GO:0000322 GO:0000325 GO:0000326 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031090 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070647 GO:0071704 GO:0098588 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA zf-RING_2

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

7.53

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008896)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0337601 RchiOBHm_Chr1g0349491 RchiOBHm_Chr1g0354951 RchiOBHm_Chr2g0101091 RchiOBHm_Chr2g0134321 RchiOBHm_Chr2g0167161 RchiOBHm_Chr4g0438601 RchiOBHm_Chr5g0013151 RchiOBHm_Chr5g0079701 RchiOBHm_Chr6g0295341
rosa_laevigata	RLG00000034093
rosa_multiflora	Rmu_sc0003177.1_g000018
rosa_roxburghii	Rroxscaffold_1G00004870 Rroxscaffold_1G00071300 Rroxscaffold_2G00108540 Rroxscaffold_2G00128230 Rroxscaffold_4G00310540 Rroxscaffold_7G00156880 Rroxscaffold_7G00202330
rosa_samantha	Rh1DG293700 Rh2AG445500 Rh5CG421200 Rh5DG037000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	33, 51
AgsI	TTSAA	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	2 cut(s)	332, 353
AluI	AGCT	2 cut(s)	332, 353
Alw21I	GWGCWC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	268
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	354, 382
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	2 cut(s)	355, 383
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	342
BmgBI	CACGTC	1 cut(s)	15
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	341
BseGI	GGATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	234, 240
BseRI	GAGGAG	2 cut(s)	312, 329
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	405
BsiHKAI	GWGCWC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	24, 268
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	235, 241
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	191
BspQI	GCTCTTC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	2 cut(s)	24, 268
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	4 cut(s)	74, 163, 292, 415
Bst6I	CTCTTC	3 cut(s)	66, 322, 369
BstACI	GRCGYC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	243, 249, 388
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	27, 271
BstMBI	GATC	2 cut(s)	24, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	405
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	46
CciI	TCATGA	1 cut(s)	271
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	32, 50
CviAII	CATG	2 cut(s)	78, 272
CviQI	GTAC	2 cut(s)	32, 50
DdeI	CTNAG	3 cut(s)	243, 249, 388
DpnI	GATC	2 cut(s)	26, 270
DpnII	GATC	2 cut(s)	24, 268
Eam1104I	CTCTTC	3 cut(s)	66, 322, 369
EarI	CTCTTC	3 cut(s)	66, 322, 369
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	340
EcoT22I	ATGCAT	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	334
FaeI	CATG	2 cut(s)	81, 275
FaiI	YATR	3 cut(s)	79, 273, 427
FatI	CATG	2 cut(s)	77, 271
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	2 cut(s)	354, 382
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	354, 382
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	354, 382
HaeIII	GGCC	1 cut(s)	405
HgaI	GACGC	1 cut(s)	373
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	2 cut(s)	81, 275
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	120
Hpy166II	GTNNAC	4 cut(s)	227, 263, 288, 364
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	3 cut(s)	7, 129, 272
Hpy8I	GTNNAC	4 cut(s)	227, 263, 288, 364
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	65, 126, 313
HpyCH4III	ACNGT	4 cut(s)	74, 163, 292, 415
HpyCH4IV	ACGT	2 cut(s)	14, 85
HpyCH4V	TGCA	4 cut(s)	44, 168, 306, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	3 cut(s)	243, 249, 388
HpySE526I	ACGT	2 cut(s)	14, 85
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	81, 275
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	24, 268
LguI	GCTCTTC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	142, 261, 279, 327, 354, 381
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	14, 85
MalI	GATC	2 cut(s)	26, 270
MboI	GATC	2 cut(s)	24, 268
MboII	GAAGA	4 cut(s)	53, 119, 339, 386
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	3 cut(s)	66, 178, 357
MnlI	CCTC	6 cut(s)	69, 196, 290, 293, 307, 370
Mph1103I	ATGCAT	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	329
NdeII	GATC	2 cut(s)	24, 268
NlaIII	CATG	2 cut(s)	81, 275
NlaIV	GGNNCC	1 cut(s)	191
NsiI	ATGCAT	1 cut(s)	46
PagI	TCATGA	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	355, 383
Psp124BI	GAGCTC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	191
RsaI	GTAC	2 cut(s)	33, 51
RsaNI	GTAC	2 cut(s)	32, 50
SacI	GAGCTC	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	322
SatI	GCNGC	2 cut(s)	354, 382
Sau3AI	GATC	2 cut(s)	24, 268
ScaI	AGTACT	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	6 cut(s)	17, 88, 268, 334, 355, 400
SfaNI	GCATC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	3 cut(s)	66, 178, 357
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	4 cut(s)	74, 163, 292, 415
TaiI	ACGT	2 cut(s)	17, 88
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	66, 178, 357
TatI	WGTACW	2 cut(s)	31, 49
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	120
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	66, 387
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.