Rroxscaffold_2G00108540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
32610896 .. 32612593
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108540.1

Sequence Viewer

Length: 210 bp
ATGTGGGAAGTGATCGGAGTACAAATGGATTATACAAATGGAATTGCCCGGGCAGGATCTGCATCAGTACTCATTCCTCTTCCAATTTACAATTCTTGCGAACGTAGAAAACAAACACAGAAAGAAGAACAGAGCGGAGGTCCAGACTTGAAAAGTTTCATTGTCCAATTTCCTGTGTCCCGAGAAGGTAGTTCAGTTAAAGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

8.93

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 135
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 64
AfaI GTAC 2 cut(s) 21, 69
AgsI TTSAA 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 59
Ama87I CYCGRG 2 cut(s) 48, 180
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 2 cut(s) 49, 50
AvaI CYCGRG 2 cut(s) 48, 180
AvaII GGWCC 1 cut(s) 140
BcnI CCSGG 2 cut(s) 49, 50
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 49, 50
Bme18I GGWCC 1 cut(s) 140
BmeT110I CYCGRG 2 cut(s) 48, 180
BmgT120I GGNCC 1 cut(s) 140
BmrFI CCNGG 2 cut(s) 49, 50
BmsI GCATC 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 49, 50
BsaBI GATNNNNATC 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 61
BsiHKCI CYCGRG 2 cut(s) 48, 180
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 48, 180
Bsp143I GATC 2 cut(s) 12, 56
BspACI CCGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 2 cut(s) 12, 56
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 15, 59
BstMBI GATC 2 cut(s) 12, 56
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 47, 48
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
CaiI CAGNNNCTG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 140
Cfr9I CCCGGG 1 cut(s) 48
Csp6I GTAC 2 cut(s) 20, 68
CviQI GTAC 2 cut(s) 20, 68
DpnI GATC 2 cut(s) 14, 58
DpnII GATC 2 cut(s) 12, 56
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 140
Eco88I CYCGRG 2 cut(s) 48, 180
FaiI YATR 1 cut(s) 33
FaqI GGGAC 1 cut(s) 163
HapII CCGG 1 cut(s) 49
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 143, 180
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 103
Kzo9I GATC 2 cut(s) 12, 56
LpnPI CCDG 4 cut(s) 39, 62, 156, 186
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 103
MalI GATC 2 cut(s) 14, 58
MbiI CCGCTC 1 cut(s) 135
MboI GATC 2 cut(s) 12, 56
MboII GAAGA 2 cut(s) 71, 137
MflI RGATCY 1 cut(s) 56
MluCI AATT 4 cut(s) 42, 84, 91, 167
MnlI CCTC 2 cut(s) 87, 131
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 49, 50
MwoI GCNNNNNNNGC 1 cut(s) 59
NciI CCSGG 2 cut(s) 49, 50
NdeII GATC 2 cut(s) 12, 56
PdmI GAANNNNTTC 1 cut(s) 155
PspPI GGNCC 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 2 cut(s) 21, 69
RsaNI GTAC 2 cut(s) 20, 68
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 2 cut(s) 12, 56
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 49, 50
SetI ASST 3 cut(s) 106, 142, 190
SfaNI GCATC 1 cut(s) 71
SinI GGWCC 1 cut(s) 140
SmaI CCCGGG 1 cut(s) 50
SrfI GCCCGGGC 1 cut(s) 50
Sse9I AATT 4 cut(s) 42, 84, 91, 167
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 47, 48
TaiI ACGT 1 cut(s) 106
TasI AATT 4 cut(s) 42, 84, 91, 167
TatI WGTACW 2 cut(s) 19, 67
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 148
TspMI CCCGGG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 140
XmaI CCCGGG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.