Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

24305779 .. 24307554

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCAGGATCGGTTGCTTCATCATCAGCTTCGGCTTGCTTCTTTACGACCGGAGACCGATCCAAATTCACCGAACAATCTTCGTTTTGGCTCTCTACCTATCTCTGAAGCAGGTACCCAAGGATTTCTTTCCTCAGAACCTCTTCCAATAGCTGGCGTGGGAGCATTAAGCACTATGTCTGAAGGGGCTCCTACTGGGTTGAGAGCAGCGATACGATCGATAATGTCAAAGCCAAGATCCAGGGCTTTGGAAGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

86

Amino Acids

9.25

Weight (kDa)

10.47

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	152
AclWI	GGATC	3 cut(s)	15, 53, 231
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	126, 201
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	28, 152
AluI	AGCT	2 cut(s)	28, 152
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	3 cut(s)	15, 53, 231
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	141
Asp718I	GGTACC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	241
BmiI	GGNNCC	2 cut(s)	115, 189
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	118, 240
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	241
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	118, 240
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	1 cut(s)	218
Bsh1285I	CGRYCG	2 cut(s)	50, 218
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	218
BsiEI	CGRYCG	2 cut(s)	50, 218
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	5 cut(s)	7, 58, 215, 236, 253
BspCNI	CTCAG	1 cut(s)	146
BspDI	ATCGAT	1 cut(s)	218
BspLI	GGNNCC	2 cut(s)	115, 189
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	3 cut(s)	15, 53, 231
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	118, 240
BssMI	GATC	5 cut(s)	7, 58, 215, 236, 253
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	36, 154
BstDEI	CTNAG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	10, 61, 218, 239, 256
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	5 cut(s)	7, 58, 215, 236, 253
BstMCI	CGRYCG	2 cut(s)	50, 218
BstNI	CCWGG	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	218
BsuTUI	ATCGAT	1 cut(s)	218
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	36, 154
ClaI	ATCGAT	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	114
CviJI	RGCY	7 cut(s)	28, 34, 90, 152, 188, 232, 245
CviKI_1	RGCY	7 cut(s)	28, 34, 90, 152, 188, 232, 245
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	5 cut(s)	9, 60, 217, 238, 255
DpnII	GATC	5 cut(s)	7, 58, 215, 236, 253
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	126, 201
EcoRII	CCWGG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	118
FaiI	YATR	1 cut(s)	176
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
Fnu4HI	GCNGC	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
HapII	CCGG	1 cut(s)	50
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	106, 136, 181
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	7, 58, 215, 236, 253
LmnI	GCTCC	2 cut(s)	161, 193
LpnPI	CCDG	6 cut(s)	63, 96, 138, 180, 226, 253
Lsp1109I	GCAGC	1 cut(s)	218
MalI	GATC	5 cut(s)	9, 60, 217, 238, 255
MboI	GATC	5 cut(s)	7, 58, 215, 236, 253
MboII	GAAGA	2 cut(s)	71, 134
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	2 cut(s)	142, 150
MroXI	GAANNNNTTC	1 cut(s)	141
MseI	TTAA	1 cut(s)	167
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
NdeII	GATC	5 cut(s)	7, 58, 215, 236, 253
NlaIV	GGNNCC	2 cut(s)	115, 189
PdmI	GAANNNNTTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	208
Ple19I	CGATCG	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	115, 189
PsuI	RGATCY	1 cut(s)	236
PvuI	CGATCG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	5 cut(s)	7, 58, 215, 236, 253
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	5 cut(s)	30, 100, 115, 142, 154
Sse9I	AATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	118
TaqI	TCGA	1 cut(s)	218
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	8
Van91I	CCANNNNNTGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.