Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Reverse (-)

32849159 .. 32853079

Gene Structure 3921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATGAGCAGGAGAGTATAATCTCAGATAGAACTGCTGTCCCAAGTACTGCCAAGCCCAATTCTGAGACCTCACATTTCACATTCCGACATTATCAAATGCCACCGAGATTGCAGTCCATGACTTTGGATACGCCTGCACACAAAACCCCAATCAATTTGAGTCACATTAGCCAAATGATAACCCCTATGTCCATGAATGAGCATGACTTCAACTCGTTTCAGAATCTCATTCCCTTCCAATCTGAAATTCCGAATTTGAATTCTCCGGAATCACAACCCAATTACCCAAATTTCCAAATTAGGGTTTTGAAAGACGACGGCCACCTCCGAAACAACCCGTATTCTCGGCCACCTCCCAATCGATACGAGTCAGAAGATGACGACGATGCTATCGACGATGATCTAGACGAGGAGAATTACGGCCAAGACAACGTCGTCGTGGAAAAGCAGAACCAACACTACCCGCACGACCTGAATCTGAGAGTTTATTTGGAGAAGTCGAATGGGTTTGATGAGATGATGGATAGTCTAGGGGAGTCAGAGAAGGATGAGGAGGAGAATGAGAGTGAGCAGAATGGGTTTGGGTTTGGGATTCCTCCGAGGCAGGGAAGGGGAGGCTCTGACCTTGATCCGGTCTCTTCGAAACCGGTGCATTCCGGCTCTGTTCCTGCTTCTGAACTGGAAAACTCTCGGGTTTCGATCTCAGAATCAATTTGTCCTCAAGGGTTGGTGGTTTTGAGCATCACTCCGGAGGTCGTTCCTTCCGGTATACTTGGCCCTGCTAATACTCATGTTAGTACTAGTATACAACGTGGTAAAGTGGTTGTTACTTGTGGTGGTCCGATTTTTGTTAGTGATACTCCTAGTGGCAGTAAGTTGATGAATGATGCTTTCAAAGGCAGGGCTAGAATTAACAGAGAGGATTGGAAGGGTTGGCAACAACCACCACAATTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.81

Weight (kDa)

4.7

Isoelectric Point (pI)

54.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccI	GTMKAC	2 cut(s)	772, 808
AccIII	TCCGGA	2 cut(s)	268, 751
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	3 cut(s)	322, 350, 424
AcsI	RAATTY	4 cut(s)	249, 256, 262, 292
AfaI	GTAC	2 cut(s)	49, 802
AfiI	CCNNNNNNNGG	3 cut(s)	304, 608, 634
AgeI	ACCGGT	1 cut(s)	649
AgsI	TTSAA	4 cut(s)	214, 262, 313, 898
AhlI	ACTAGT	1 cut(s)	803
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
Alw26I	GTCTC	2 cut(s)	62, 643
AlwI	GGATC	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	693
Aor13HI	TCCGGA	2 cut(s)	268, 751
AoxI	GGCC	4 cut(s)	322, 350, 424, 778
ApoI	RAATTY	4 cut(s)	249, 256, 262, 292
AsiGI	ACCGGT	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	779, 842
AsuII	TTCGAA	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	1 cut(s)	842
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	2 cut(s)	337, 439
BcgI	CGANNNNNNTGC	2 cut(s)	634, 668
BciVI	GTATCC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	62, 643
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	5 cut(s)	407, 533, 804, 867, 909
BfuI	GTATCC	1 cut(s)	124
BmcAI	AGTACT	2 cut(s)	49, 802
Bme18I	GGWCC	1 cut(s)	842
BmeT110I	CYCGRG	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	779, 842
BmsI	GCATC	3 cut(s)	379, 753, 880
BplI	GAGNNNNNCTC	2 cut(s)	733, 765
Bpu14I	TTCGAA	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	364
BsaI	GGTCTC	2 cut(s)	62, 643
BsaJI	CCNNGG	1 cut(s)	602
BsaWI	WCCGGW	5 cut(s)	268, 634, 649, 751, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 608, 634
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	687
BseAI	TCCGGA	2 cut(s)	268, 751
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	2 cut(s)	10, 556
BseLI	CCNNNNNNNGG	3 cut(s)	304, 608, 634
BseMII	CTCAG	4 cut(s)	39, 57, 473, 720
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	3 cut(s)	428, 569, 572
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	324, 352, 426, 780
BshTI	ACCGGT	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	364
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	6 cut(s)	269, 635, 650, 660, 752, 768
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	304, 608, 634
BsmAI	GTCTC	2 cut(s)	62, 643
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	4 cut(s)	324, 352, 426, 780
Bso31I	GGTCTC	2 cut(s)	62, 643
BsoBI	CYCGRG	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	644
Bsp13I	TCCGGA	2 cut(s)	268, 751
Bsp143I	GATC	3 cut(s)	403, 631, 702
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	4 cut(s)	324, 352, 426, 780
BspCNI	CTCAG	4 cut(s)	38, 58, 474, 719
BspDI	ATCGAT	1 cut(s)	364
BspEI	TCCGGA	2 cut(s)	268, 751
BspPI	GGATC	1 cut(s)	626
BspT104I	TTCGAA	1 cut(s)	644
BspTNI	GGTCTC	2 cut(s)	62, 643
BsrFI	RCCGGY	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	687
BssAI	RCCGGY	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	3 cut(s)	403, 631, 702
BssNAI	GTATAC	2 cut(s)	773, 809
Bst1107I	GTATAC	2 cut(s)	773, 809
Bst6I	CTCTTC	1 cut(s)	646
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	4 cut(s)	25, 66, 482, 706
BstF5I	GGATG	2 cut(s)	10, 556
BstKTI	GATC	3 cut(s)	406, 634, 705
BstMAI	GTCTC	2 cut(s)	62, 643
BstMBI	GATC	3 cut(s)	403, 631, 702
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstZ17I	GTATAC	2 cut(s)	773, 809
Bsu15I	ATCGAT	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	124
BsuRI	GGCC	4 cut(s)	324, 352, 426, 780
BsuTUI	ATCGAT	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	10, 556
Cac8I	GCNNGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	779, 842
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	48, 801
CspAI	ACCGGT	1 cut(s)	649
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	4 cut(s)	121, 196, 206, 794
CviJI	RGCY	9 cut(s)	58, 174, 324, 352, 426, 621, 663, 780, 908
CviKI_1	RGCY	9 cut(s)	58, 174, 324, 352, 426, 621, 663, 780, 908
CviQI	GTAC	2 cut(s)	48, 801
DdeI	CTNAG	4 cut(s)	25, 66, 482, 706
DpnI	GATC	3 cut(s)	405, 633, 704
DpnII	GATC	3 cut(s)	403, 631, 702
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	3 cut(s)	322, 350, 424
Eam1104I	CTCTTC	1 cut(s)	646
EarI	CTCTTC	1 cut(s)	646
Eco31I	GGTCTC	2 cut(s)	62, 643
Eco47I	GGWCC	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	693
EcoRI	GAATTC	1 cut(s)	262
FaeI	CATG	4 cut(s)	124, 199, 209, 797
FaiI	YATR	8 cut(s)	20, 122, 191, 197, 207, 773, 795, 809
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	120, 195, 205, 793
FauI	CCCGC	1 cut(s)	474
FblI	GTMKAC	2 cut(s)	772, 808
FokI	GGATG	2 cut(s)	17, 563
FspBI	CTAG	5 cut(s)	407, 533, 804, 867, 909
HaeIII	GGCC	4 cut(s)	324, 352, 426, 780
HapII	CCGG	6 cut(s)	269, 635, 650, 660, 752, 768
Hin1II	CATG	4 cut(s)	124, 199, 209, 797
HinfI	GANTC	8 cut(s)	163, 226, 272, 371, 478, 539, 595, 710
HpaII	CCGG	6 cut(s)	269, 635, 650, 660, 752, 768
Hpy166II	GTNNAC	2 cut(s)	773, 809
Hpy188III	TCNNGA	3 cut(s)	269, 407, 752
Hpy8I	GTNNAC	2 cut(s)	773, 809
Hpy99I	CGWCG	5 cut(s)	323, 389, 401, 440, 443
HpyAV	CCTTC	5 cut(s)	247, 541, 606, 774, 925
HpyCH4IV	ACGT	2 cut(s)	435, 814
HpyCH4V	TGCA	3 cut(s)	115, 140, 655
HpyF3I	CTNAG	4 cut(s)	25, 66, 482, 706
HpySE526I	ACGT	2 cut(s)	435, 814
Hsp92II	CATG	4 cut(s)	124, 199, 209, 797
Kpn2I	TCCGGA	2 cut(s)	268, 751
Kzo9I	GATC	3 cut(s)	403, 631, 702
LweI	GCATC	3 cut(s)	379, 753, 880
MaeI	CTAG	5 cut(s)	407, 533, 804, 867, 909
MaeII	ACGT	2 cut(s)	435, 814
MaeIII	GTNAC	2 cut(s)	164, 829
MalI	GATC	3 cut(s)	405, 633, 704
MboI	GATC	3 cut(s)	403, 631, 702
MboII	GAAGA	2 cut(s)	389, 633
MlyI	GAGTC	3 cut(s)	172, 380, 548
MmeI	TCCRAC	1 cut(s)	112
MroI	TCCGGA	2 cut(s)	268, 751
MseI	TTAA	2 cut(s)	915, 961
MspI	CCGG	6 cut(s)	269, 635, 650, 660, 752, 768
Mva1269I	GAATGC	1 cut(s)	655
NdeII	GATC	3 cut(s)	403, 631, 702
NlaIII	CATG	4 cut(s)	124, 199, 209, 797
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PctI	GAATGC	1 cut(s)	655
PfeI	GAWTC	5 cut(s)	226, 272, 478, 595, 710
PflFI	GACNNNGTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	649
PleI	GAGTC	3 cut(s)	171, 379, 547
PpsI	GAGTC	3 cut(s)	171, 379, 547
PspPI	GGNCC	2 cut(s)	779, 842
PsrI	GAACNNNNNNTAC	2 cut(s)	446, 478
PsyI	GACNNNGTC	1 cut(s)	434
RsaI	GTAC	2 cut(s)	49, 802
RsaNI	GTAC	2 cut(s)	48, 801
SaqAI	TTAA	2 cut(s)	915, 961
Sau3AI	GATC	3 cut(s)	403, 631, 702
Sau96I	GGNCC	2 cut(s)	779, 842
ScaI	AGTACT	2 cut(s)	49, 802
SchI	GAGTC	3 cut(s)	172, 380, 548
SetI	ASST	8 cut(s)	74, 330, 358, 438, 477, 630, 759, 817
SfaNI	GCATC	3 cut(s)	379, 753, 880
SfuI	TTCGAA	1 cut(s)	644
SinI	GGWCC	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SpeI	ACTAGT	1 cut(s)	803
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	5 cut(s)	407, 533, 804, 867, 909
TaiI	ACGT	2 cut(s)	438, 817
TaqI	TCGA	5 cut(s)	364, 396, 503, 644, 701
TatI	WGTACW	2 cut(s)	47, 800
TfiI	GAWTC	5 cut(s)	226, 272, 478, 595, 710
Tru1I	TTAA	2 cut(s)	915, 961
Tru9I	TTAA	2 cut(s)	915, 961
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	212, 899
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	842
XapI	RAATTY	4 cut(s)	249, 256, 262, 292
XbaI	TCTAGA	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	772, 808
XspI	CTAG	5 cut(s)	407, 533, 804, 867, 909
ZrmI	AGTACT	2 cut(s)	49, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.