Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000200.1

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

69789 .. 77619

Gene Structure 7831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000200.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtttaattatgatatatcacagctttatctttcttctgctatttcctcgctctcttcttgtatttttgggtttggacccttaatatctggtatcaaagccgtcggtatcatgggaccggcgcgtaagggtggcaccacccatcatacgtcgaaggatctttcagcggtggaaatggattctttggcgcaacagacagtggccgaaggccaacttcaagcggttcgcgactccgtcgacgagattcgtgcttctcacgagcgtatgcgttctgagaacgctgaaattcaagctcagaacgctgaatttcagtctcagttgctcgacgaacttcgtactcttcgagttacatcggtgaatcattcttcacctgctccgttgtctcctaacccgctgcaatttggatctatcccatcttctgaaccgtctacttctacggtttcggctccttcacctatttaccctcacggtctgggtattttgagcttcactcccggtgaaatttcttcaggtataatcgtttcttcgacagctactactcggcccacggtaaaatctcaggccactgcgccttctcctagtggtagtaagttgatgactgatgcatttaaaggcagagataggtttgacaactctgactctgggaattggcaacaaccaccacattattatcaacatactattggtcctgcttatactgatttcaattttcctaatcatgtatcgcattcatccaatattcctgttccaagcatgggttacccagggttccattctcataatatgcctgctcctactatgggttatatacttggcaattcttttcatggtggttccatgcctcttggtccttctggtgcctcttcatactaccctcagtggcaggctaattctagcagcgataatgtttcgcaatggcatgcataccccagcaacaataatggaccacaaaatagacccaccttgccttttgcttttgcaggccagtttagcttgaggtcgagcgtacttggggttgaggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

36.46

Weight (kDa)

6.2

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	379
AccB1I	GGYRCC	2 cut(s)	134, 857
AccI	GTMKAC	2 cut(s)	237, 428
AccII	CGCG	2 cut(s)	124, 228
AciI	CCGC	3 cut(s)	167, 221, 392
AclWI	GGATC	2 cut(s)	165, 412
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	285, 305, 501
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	2 cut(s)	337, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	755, 800
AgsI	TTSAA	3 cut(s)	218, 290, 706
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	5 cut(s)	25, 293, 486, 533, 993
AluI	AGCT	5 cut(s)	25, 293, 486, 533, 993
Alw26I	GTCTC	2 cut(s)	318, 387
AlwI	GGATC	2 cut(s)	165, 412
AoxI	GGCC	5 cut(s)	201, 208, 542, 561, 982
ApeKI	GCWGC	2 cut(s)	394, 897
ApoI	RAATTY	3 cut(s)	285, 305, 501
AspLEI	GCGC	3 cut(s)	124, 190, 571
AspS9I	GGNCC	6 cut(s)	77, 116, 543, 686, 848, 944
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	4 cut(s)	360, 367, 444, 509
AvaII	GGWCC	5 cut(s)	77, 116, 686, 848, 944
BanI	GGYRCC	2 cut(s)	134, 857
BauI	CACGAG	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	381, 909
BccI	CCATC	2 cut(s)	150, 421
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	318, 387
BfaI	CTAG	2 cut(s)	579, 894
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	2 cut(s)	395, 898
BlsI	GCNGC	2 cut(s)	396, 899
Bme1390I	CCNGG	2 cut(s)	495, 765
Bme18I	GGWCC	5 cut(s)	77, 116, 686, 848, 944
BmgT120I	GGNCC	6 cut(s)	77, 116, 543, 686, 848, 944
BmiI	GGNNCC	7 cut(s)	79, 117, 136, 447, 770, 835, 859
BmrFI	CCNGG	2 cut(s)	495, 765
BmsI	GCATC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpuEI	CTTGAG	1 cut(s)	1015
BpuMI	CCSGG	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	546, 763, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	755, 800
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	985
Bse3DI	GCAATG	1 cut(s)	920
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	546, 763, 764
BseGI	GGATG	1 cut(s)	731
BseLI	CCNNNNNNNGG	2 cut(s)	755, 800
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	5 cut(s)	264, 308, 329, 572, 890
BseNI	ACTGG	1 cut(s)	985
BseXI	GCAGC	2 cut(s)	381, 909
BseYI	CCCAGC	1 cut(s)	929
Bsh1236I	CGCG	2 cut(s)	124, 228
BshFI	GGCC	5 cut(s)	203, 210, 544, 563, 984
BshNI	GGYRCC	2 cut(s)	134, 857
BsiSI	CCGG	2 cut(s)	119, 495
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	755, 800
BsmAI	GTCTC	2 cut(s)	318, 387
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	5 cut(s)	203, 210, 544, 563, 984
Bsp143I	GATC	2 cut(s)	157, 404
Bsp68I	TCGCGA	1 cut(s)	228
BspACI	CCGC	3 cut(s)	167, 221, 392
BspANI	GGCC	5 cut(s)	203, 210, 544, 563, 984
BspCNI	CTCAG	5 cut(s)	265, 307, 328, 571, 889
BspFNI	CGCG	2 cut(s)	124, 228
BspLI	GGNNCC	7 cut(s)	79, 117, 136, 447, 770, 835, 859
BspMI	ACCTGC	1 cut(s)	379
BspPI	GGATC	2 cut(s)	165, 412
BspT107I	GGYRCC	2 cut(s)	134, 857
BsrDI	GCAATG	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	985
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	546, 763, 764
BssMI	GATC	2 cut(s)	157, 404
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	5 cut(s)	199, 426, 439, 470, 550
Bst6I	CTCTTC	3 cut(s)	61, 345, 868
BstC8I	GCNNGC	4 cut(s)	789, 885, 921, 982
BstDEI	CTNAG	5 cut(s)	273, 294, 315, 558, 876
BstDSI	CCRYGG	1 cut(s)	546
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	731
BstFNI	CGCG	2 cut(s)	124, 228
BstHHI	GCGC	3 cut(s)	124, 190, 571
BstKTI	GATC	2 cut(s)	160, 407
BstMAI	GTCTC	2 cut(s)	318, 387
BstMBI	GATC	2 cut(s)	157, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 990
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	923
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	493, 763
BstUI	CGCG	2 cut(s)	124, 228
BstV1I	GCAGC	2 cut(s)	381, 909
BstX2I	RGATCY	2 cut(s)	157, 404
BstYI	RGATCY	2 cut(s)	157, 404
BsuRI	GGCC	5 cut(s)	203, 210, 544, 563, 984
BtgI	CCRYGG	1 cut(s)	546
BtsCI	GGATG	1 cut(s)	731
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	3 cut(s)	204, 564, 884
BtuMI	TCGCGA	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	4 cut(s)	789, 885, 921, 982
CfoI	GCGC	3 cut(s)	124, 190, 571
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	6 cut(s)	77, 116, 543, 686, 848, 944
Csp6I	GTAC	2 cut(s)	336, 1007
CviAII	CATG	6 cut(s)	112, 719, 754, 827, 838, 920
CviQI	GTAC	2 cut(s)	336, 1007
DdeI	CTNAG	5 cut(s)	273, 294, 315, 558, 876
DpnI	GATC	2 cut(s)	159, 406
DpnII	GATC	2 cut(s)	157, 404
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	3 cut(s)	61, 345, 868
EarI	CTCTTC	3 cut(s)	61, 345, 868
Eco47I	GGWCC	5 cut(s)	77, 116, 686, 848, 944
Eco57I	CTGAAG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	763
EcoT22I	ATGCAT	2 cut(s)	607, 925
FaeI	CATG	6 cut(s)	115, 722, 757, 830, 841, 923
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	6 cut(s)	111, 718, 753, 826, 837, 919
FauI	CCCGC	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	237, 428
Fnu4HI	GCNGC	2 cut(s)	395, 898
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	395, 898
FspBI	CTAG	2 cut(s)	579, 894
GlaI	GCGC	3 cut(s)	123, 189, 570
GluI	GCNGC	2 cut(s)	395, 898
GsaI	CCCAGC	1 cut(s)	933
HaeIII	GGCC	5 cut(s)	203, 210, 544, 563, 984
HapII	CCGG	2 cut(s)	119, 495
HhaI	GCGC	3 cut(s)	124, 190, 571
Hin1II	CATG	6 cut(s)	115, 722, 757, 830, 841, 923
Hin6I	GCGC	3 cut(s)	122, 188, 569
HinP1I	GCGC	3 cut(s)	122, 188, 569
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	5 cut(s)	179, 230, 244, 358, 638
HpaII	CCGG	2 cut(s)	119, 495
HphI	GGTGA	4 cut(s)	360, 367, 444, 509
Hpy166II	GTNNAC	2 cut(s)	238, 429
Hpy188I	TCNGA	4 cut(s)	274, 297, 421, 637
Hpy188III	TCNNGA	2 cut(s)	227, 257
Hpy8I	GTNNAC	2 cut(s)	238, 429
Hpy99I	CGWCG	5 cut(s)	107, 154, 239, 242, 329
HpyAV	CCTTC	5 cut(s)	148, 200, 459, 582, 861
HpyCH4III	ACNGT	5 cut(s)	199, 426, 439, 470, 550
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	4 cut(s)	397, 605, 923, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 990
HpyF3I	CTNAG	5 cut(s)	273, 294, 315, 558, 876
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	6 cut(s)	115, 722, 757, 830, 841, 923
HspAI	GCGC	3 cut(s)	122, 188, 569
Kzo9I	GATC	2 cut(s)	157, 404
LmnI	GCTCC	3 cut(s)	379, 451, 796
Lsp1109I	GCAGC	2 cut(s)	381, 909
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	579, 894
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	346, 758
MalI	GATC	2 cut(s)	159, 406
MboI	GATC	2 cut(s)	157, 404
MboII	GAAGA	8 cut(s)	27, 48, 332, 357, 408, 498, 516, 855
MflI	RGATCY	2 cut(s)	157, 404
MluCI	AATT	9 cut(s)	7, 285, 305, 398, 501, 646, 706, 817, 889
MlyI	GAGTC	2 cut(s)	224, 632
MnlI	CCTC	7 cut(s)	58, 474, 852, 871, 885, 990, 1012
Mph1103I	ATGCAT	2 cut(s)	607, 925
MseI	TTAA	3 cut(s)	6, 83, 609
MspA1I	CMGCKG	2 cut(s)	167, 394
MspI	CCGG	2 cut(s)	119, 495
MspR9I	CCNGG	2 cut(s)	495, 765
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	2 cut(s)	124, 228
MwoI	GCNNNNNNNGC	2 cut(s)	299, 990
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	157, 404
NlaIII	CATG	6 cut(s)	115, 722, 757, 830, 841, 923
NlaIV	GGNNCC	7 cut(s)	79, 117, 136, 447, 770, 835, 859
NmeAIII	GCCGAG	1 cut(s)	520
NruI	TCGCGA	1 cut(s)	228
NsiI	ATGCAT	2 cut(s)	607, 925
NspI	RCATGY	1 cut(s)	923
PaeI	GCATGC	1 cut(s)	923
PaqCI	CACCTGC	1 cut(s)	379
PasI	CCCWGGG	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	179, 244, 358
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	396, 899
PleI	GAGTC	2 cut(s)	224, 632
PpsI	GAGTC	2 cut(s)	224, 632
Psp6I	CCWGG	1 cut(s)	763
PspEI	GGTNACC	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	7 cut(s)	79, 117, 136, 447, 770, 835, 859
PspPI	GGNCC	6 cut(s)	77, 116, 543, 686, 848, 944
PsuI	RGATCY	2 cut(s)	157, 404
PsyI	GACNNNGTC	1 cut(s)	233
RruI	TCGCGA	1 cut(s)	228
RsaI	GTAC	2 cut(s)	337, 1008
RsaNI	GTAC	2 cut(s)	336, 1007
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	6, 83, 609
SatI	GCNGC	2 cut(s)	395, 898
Sau3AI	GATC	2 cut(s)	157, 404
Sau96I	GGNCC	6 cut(s)	77, 116, 543, 686, 848, 944
SchI	GAGTC	2 cut(s)	224, 632
ScrFI	CCNGG	2 cut(s)	495, 765
SfaNI	GCATC	1 cut(s)	592
SgrDI	CGTCGACG	1 cut(s)	236
SinI	GGWCC	5 cut(s)	77, 116, 686, 848, 944
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
SphI	GCATGC	1 cut(s)	923
Sse9I	AATT	9 cut(s)	7, 285, 305, 398, 501, 646, 706, 817, 889
SsiI	CCGC	3 cut(s)	167, 221, 392
SspI	AATATT	1 cut(s)	739
SspMI	CTAG	2 cut(s)	579, 894
StyD4I	CCNGG	2 cut(s)	493, 763
TaaI	ACNGT	5 cut(s)	199, 426, 439, 470, 550
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	6 cut(s)	152, 237, 324, 343, 527, 1001
TasI	AATT	9 cut(s)	7, 285, 305, 398, 501, 646, 706, 817, 889
TfiI	GAWTC	3 cut(s)	179, 244, 358
Tru1I	TTAA	3 cut(s)	6, 83, 609
Tru9I	TTAA	3 cut(s)	6, 83, 609
TscAI	CASTG	3 cut(s)	204, 571, 884
TseI	GCWGC	2 cut(s)	394, 897
TspDTI	ATGAA	3 cut(s)	720, 815, 855
TspGWI	ACGGA	2 cut(s)	223, 366
TspRI	CASTG	3 cut(s)	204, 571, 884
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	5 cut(s)	77, 116, 686, 848, 944
XapI	RAATTY	3 cut(s)	285, 305, 501
XceI	RCATGY	1 cut(s)	923
XmiI	GTMKAC	2 cut(s)	237, 428
XspI	CTAG	2 cut(s)	579, 894
Zsp2I	ATGCAT	2 cut(s)	607, 925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.