Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031157.1

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 755

Gene Structure 755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

acccatattatctggtatcagagcttcacgctcataggaccgtcgcgtaagggtggcaccaatcctcagtcgtcgaaggaactttcggctgctaagatggattatttggcacaacaagcggtggttgaggctcaacttcaggcggtgcactactcggttgatgaaattcgggccgctcaagctttgatccgctctgaaaatgctgagattcatgctcataatgcagaattccgctctcagctactagaagagcttcgagctctcagaacccgctctgactctattctagtctctccgaacttgctgcctcccagctctctcccggcctctgatcctgcaaattcgagggtttcattctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

6.37

Isoelectric Point (pI)

80.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	4 cut(s)	176, 192, 234, 273
AccII	CGCG	1 cut(s)	46
AciI	CCGC	6 cut(s)	119, 143, 174, 190, 232, 271
AclWI	GGATC	2 cut(s)	181, 326
AcsI	RAATTY	3 cut(s)	165, 227, 340
AcuI	CTGAAG	1 cut(s)	122
AluBI	AGCT	6 cut(s)	24, 182, 241, 253, 260, 315
AluI	AGCT	6 cut(s)	24, 182, 241, 253, 260, 315
Alw21I	GWGCWC	2 cut(s)	150, 262
Alw26I	GTCTC	1 cut(s)	295
Alw44I	GTGCAC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	181, 326
AoxI	GGCC	2 cut(s)	171, 324
ApaLI	GTGCAC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	89, 304
ApoI	RAATTY	3 cut(s)	165, 227, 340
Asp700I	GAANNNNTTC	1 cut(s)	252
AspS9I	GGNCC	2 cut(s)	38, 171
AsuC2I	CCSGG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	150
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
Bbv12I	GWGCWC	2 cut(s)	150, 262
BbvI	GCAGC	2 cut(s)	76, 291
BccI	CCATC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	245, 287
BisI	GCNGC	3 cut(s)	90, 174, 305
BlsI	GCNGC	3 cut(s)	91, 175, 306
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	38, 171
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	323
BseMII	CTCAG	4 cut(s)	80, 195, 251, 277
BseSI	GKGCMC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	76, 291
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	173, 326
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	150, 262
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	173, 326
Bsp1286I	GDGCHC	2 cut(s)	150, 262
Bsp143I	GATC	2 cut(s)	186, 331
BspACI	CCGC	6 cut(s)	119, 143, 174, 190, 232, 271
BspANI	GGCC	2 cut(s)	173, 326
BspCNI	CTCAG	4 cut(s)	79, 196, 250, 276
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	181, 326
BspQI	GCTCTTC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	4 cut(s)	176, 192, 234, 273
BssMI	GATC	2 cut(s)	186, 331
Bst4CI	ACNGT	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	243
BstDEI	CTNAG	5 cut(s)	66, 93, 204, 237, 263
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	189, 334
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	186, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 179, 221
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	150
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	76, 291
BsuRI	GGCC	2 cut(s)	173, 326
Cfr13I	GGNCC	2 cut(s)	38, 171
CviAII	CATG	1 cut(s)	212
DdeI	CTNAG	5 cut(s)	66, 93, 204, 237, 263
DpnI	GATC	2 cut(s)	188, 333
DpnII	GATC	2 cut(s)	186, 331
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	122
EcoICRI	GAGCTC	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	6, 35, 213, 219, 361
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	90, 174, 305
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	90, 174, 305
FspBI	CTAG	2 cut(s)	245, 287
GluI	GCNGC	3 cut(s)	90, 174, 305
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	173, 326
HapII	CCGG	1 cut(s)	323
Hin1II	CATG	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	2 cut(s)	208, 278
HpaII	CCGG	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	6 cut(s)	21, 196, 266, 277, 297, 331
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	46, 76
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	148, 224, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 179, 221
HpyF3I	CTNAG	5 cut(s)	66, 93, 204, 237, 263
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	186, 331
LguI	GCTCTTC	1 cut(s)	243
LpnPI	CCDG	4 cut(s)	125, 325, 336, 348
Lsp1109I	GCAGC	2 cut(s)	76, 291
MaeI	CTAG	2 cut(s)	245, 287
MalI	GATC	2 cut(s)	188, 333
MbiI	CCGCTC	4 cut(s)	176, 192, 234, 273
MboI	GATC	2 cut(s)	186, 331
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	150, 262
MluCI	AATT	3 cut(s)	165, 227, 340
MlyI	GAGTC	1 cut(s)	272
MnlI	CCTC	5 cut(s)	75, 121, 318, 337, 339
MroXI	GAANNNNTTC	1 cut(s)	252
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	116, 179, 221
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	186, 331
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	91, 175, 306
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	38, 171
SacI	GAGCTC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	243
SatI	GCNGC	3 cut(s)	90, 174, 305
Sau3AI	GATC	2 cut(s)	186, 331
Sau96I	GGNCC	2 cut(s)	38, 171
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	150, 262
SetI	ASST	6 cut(s)	26, 184, 243, 255, 262, 317
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	3 cut(s)	165, 227, 340
SsiI	CCGC	6 cut(s)	119, 143, 174, 190, 232, 271
SspMI	CTAG	2 cut(s)	245, 287
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	74, 256, 344
TasI	AATT	3 cut(s)	165, 227, 340
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	208
TseI	GCWGC	2 cut(s)	89, 304
TspDTI	ATGAA	3 cut(s)	177, 200, 342
VneI	GTGCAC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	3 cut(s)	165, 227, 340
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	245, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.