Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Reverse (-)

14505758 .. 14506954

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAGTATTAAGCACTATGTCTGAAGGGGGTCCTTCTGGGTTCTCTCTACCTAGCACGGCAGTTCCTACTTCTTCTGTGTCGGTACCGCCTTCACCACCCTCCTCACAGGTAGCTTCTGGTGGCAGTCTAAGTCACCAAAGAGGTAAATCCATTGCTAGTACCGCTGCTACTACTGATGCTGTTACTAGATCTGTTGGTCATAGTGAAAGGTTAATGGGTGCTGCTTTTAGAGCTAGAGATAGGGAAGAACGACATGATTACGGTGGCGTTCCTTATCAATCTAATTTTTATCAGCATACCGTAGCTCCCAATCATTATACTAACATACCTGCTTATAATTCTCAATTTATTCATGGTATACCTGTGTCACATATGCACTATGTTCATGGAACTTCTATTTTGGGAGGGCCACTACAGCAAGGACAGTCTAGCAATTCTTCAATGATACCTCCATGGCAATTTCCATCGAGTAATCTTAATTTTCAGGAACAGATGGCCAGGCCTGCATTACCATTTGCAGTGAATCATTACTTAACATCACAATTGTCGACTCAACCCATACCAGCTCAGGCTTCATCTACCTATTCCACCATTTCAACACCGGTTAGTCCACAATGTGCAGATGAAAGTGGAAAAAGTGACCGGCATTTGAGCACGCCTCTATTGAGAATTGGTATCATGCGTATGAAAAGCATACTACTGGGCTACTGGCAAGACTGCAAGAGTGAGTCATGGTTGTCTTGCTCTCTGCCTCTCTCCCAAGTCCCAAGTTCAAACGGGCAAATCTTGAAACCCAGCAAGCGTTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

29.16

Weight (kDa)

9.22

Isoelectric Point (pI)

64.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	340
Acc65I	GGTACC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	2 cut(s)	361, 551
AciI	CCGC	2 cut(s)	89, 165
AcoI	YGGCCR	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	2 cut(s)	87, 163
AgeI	ACCGGT	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	444, 600, 777, 793
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	4 cut(s)	116, 236, 308, 569
AluI	AGCT	4 cut(s)	116, 236, 308, 569
Alw21I	GWGCWC	1 cut(s)	659
AoxI	GGCC	3 cut(s)	410, 498, 503
ApeKI	GCWGC	2 cut(s)	167, 224
AsiGI	ACCGGT	1 cut(s)	604
Asp718I	GGTACC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	32, 410
AsuHPI	GGTGA	2 cut(s)	87, 128
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	500
BanI	GGYRCC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	154, 211
BccI	CCATC	2 cut(s)	475, 490
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	502
BfaI	CTAG	5 cut(s)	54, 159, 189, 237, 432
BfmI	CTRYAG	1 cut(s)	416
BfuAI	ACCTGC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	2 cut(s)	168, 225
BlsI	GCNGC	2 cut(s)	169, 226
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	32, 410
BmiI	GGNNCC	2 cut(s)	33, 87
BmrFI	CCNGG	1 cut(s)	502
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	646, 678
Bpu10I	CCTNAGC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	455
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bse118I	RCCGGY	2 cut(s)	604, 645
Bse1I	ACTGG	2 cut(s)	708, 716
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	2 cut(s)	708, 716
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	154, 211
BseYI	CCCAGC	1 cut(s)	797
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	3 cut(s)	412, 500, 505
BshNI	GGYRCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	605, 646
BslFI	GGGAC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	752
BsnI	GGCC	3 cut(s)	412, 500, 505
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	455
BspACI	CCGC	2 cut(s)	89, 165
BspANI	GGCC	3 cut(s)	412, 500, 505
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	33, 87
BspMI	ACCTGC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	2 cut(s)	604, 645
BsrI	ACTGG	2 cut(s)	708, 716
BssAI	RCCGGY	2 cut(s)	604, 645
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	455
Bst1107I	GTATAC	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	502
Bst4CI	ACNGT	3 cut(s)	266, 304, 429
BstC8I	GCNNGC	3 cut(s)	507, 659, 803
BstDEI	CTNAG	2 cut(s)	131, 570
BstDSI	CCRYGG	1 cut(s)	455
BstKTI	GATC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 233, 418, 506
BstNI	CCWGG	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	154, 211
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	362
BsuRI	GGCC	3 cut(s)	412, 500, 505
BtgI	CCRYGG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	507, 659, 803
Cfr10I	RCCGGY	2 cut(s)	604, 645
Cfr13I	GGNCC	2 cut(s)	32, 410
Csp6I	GTAC	2 cut(s)	86, 162
CspAI	ACCGGT	1 cut(s)	604
CviAII	CATG	6 cut(s)	257, 356, 389, 456, 682, 735
CviJI	RGCY	9 cut(s)	116, 236, 308, 412, 500, 505, 569, 575, 708
CviKI_1	RGCY	9 cut(s)	116, 236, 308, 412, 500, 505, 569, 575, 708
CviQI	GTAC	2 cut(s)	86, 162
DdeI	CTNAG	2 cut(s)	131, 570
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	455
Eco147I	AGGCCT	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	455
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	6 cut(s)	260, 359, 392, 459, 685, 738
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	6 cut(s)	256, 355, 388, 455, 681, 734
FauNDI	CATATG	1 cut(s)	375
FblI	GTMKAC	2 cut(s)	361, 551
Fnu4HI	GCNGC	2 cut(s)	168, 225
Fsp4HI	GCNGC	2 cut(s)	168, 225
FspBI	CTAG	5 cut(s)	54, 159, 189, 237, 432
GluI	GCNGC	2 cut(s)	168, 225
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	3 cut(s)	412, 500, 505
HapII	CCGG	2 cut(s)	605, 646
Hin1II	CATG	6 cut(s)	260, 359, 392, 459, 685, 738
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	3 cut(s)	526, 553, 731
HpaII	CCGG	2 cut(s)	605, 646
HphI	GGTGA	2 cut(s)	87, 128
Hpy166II	GTNNAC	3 cut(s)	362, 552, 614
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	488, 790
Hpy8I	GTNNAC	3 cut(s)	362, 552, 614
HpyAV	CCTTC	3 cut(s)	20, 45, 102
HpyCH4III	ACNGT	3 cut(s)	266, 304, 429
HpyCH4V	TGCA	5 cut(s)	379, 509, 521, 623, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 233, 418, 506
HpyF3I	CTNAG	2 cut(s)	131, 570
Hsp92II	CATG	6 cut(s)	260, 359, 392, 459, 685, 738
KpnI	GGTACC	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	154, 211
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	5 cut(s)	54, 159, 189, 237, 432
MaeIII	GTNAC	4 cut(s)	134, 184, 369, 641
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	66, 260, 432
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	659
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	8 cut(s)	286, 340, 347, 436, 461, 481, 545, 672
MluNI	TGGCCA	1 cut(s)	500
MlyI	GAGTC	2 cut(s)	547, 740
MnlI	CCTC	7 cut(s)	112, 115, 137, 401, 462, 672, 765
Mox20I	TGGCCA	1 cut(s)	500
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	5 cut(s)	11, 215, 480, 536, 814
MslI	CAYNNNNRTG	1 cut(s)	686
Msp20I	TGGCCA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	605, 646
MspR9I	CCNGG	1 cut(s)	502
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	164, 233, 418, 506
NcoI	CCATGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	260, 359, 392, 459, 685, 738
NlaIV	GGNNCC	2 cut(s)	33, 87
NmuCI	GTSAC	3 cut(s)	134, 369, 641
PceI	AGGCCT	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	604
PkrI	GCNGC	2 cut(s)	169, 226
PleI	GAGTC	2 cut(s)	547, 739
PpsI	GAGTC	2 cut(s)	547, 739
PpuMI	RGGWCCY	1 cut(s)	32
PsiI	TTATAA	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	797
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	33, 87
PspPI	GGNCC	2 cut(s)	32, 410
PspPPI	RGGWCCY	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	87, 163
RsaNI	GTAC	2 cut(s)	86, 162
RseI	CAYNNNNRTG	1 cut(s)	686
SalI	GTCGAC	1 cut(s)	550
SaqAI	TTAA	5 cut(s)	11, 215, 480, 536, 814
SatI	GCNGC	2 cut(s)	168, 225
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	2 cut(s)	32, 410
SchI	GAGTC	2 cut(s)	547, 740
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	8 cut(s)	286, 340, 347, 436, 461, 481, 545, 672
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	2 cut(s)	89, 165
SspMI	CTAG	5 cut(s)	54, 159, 189, 237, 432
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	1 cut(s)	500
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	266, 304, 429
TaqI	TCGA	2 cut(s)	470, 551
TasI	AATT	8 cut(s)	286, 340, 347, 436, 461, 481, 545, 672
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	5 cut(s)	11, 215, 480, 536, 814
Tru9I	TTAA	5 cut(s)	11, 215, 480, 536, 814
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	3 cut(s)	134, 369, 641
TseI	GCWGC	2 cut(s)	167, 224
Tsp45I	GTSAC	3 cut(s)	134, 369, 641
TspDTI	ATGAA	5 cut(s)	344, 377, 567, 642, 704
TspRI	CASTG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	32
XmiI	GTMKAC	2 cut(s)	361, 551
XspI	CTAG	5 cut(s)	54, 159, 189, 237, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.