RchiOBHm_Chr4g0415941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0006967
Physical Location & Seq
Forward (+)
40776988 .. 40777552
565 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38612

Sequence Viewer

Length: 294 bp
ATGGATTATTTACCACAACAAGCGGTGGCAGAGGCTCAACTTCAAGCGGTGCACGACTCGGTTGATGAAATTCGGGTTGCTCAAGCATTGATCTGCTCTGAAAATGCTAAGATTCATGCTCAGAATGCAGAAATTTGCTCTCAGCTACTAGAAGAGCTTCGAGCTCTCCGAGTCAACTATATGCCCCGCTCTAACTCTATTTCAGTCTCTCCAAACCCACTGCATTCCAGTTCTATCCCGGCCTCTGAACCAGAAAATTTGAGGATTTCATTCTCAGAACCAATTTGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.68

Weight (kDa)

4.82

Isoelectric Point (pI)

71.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 3 cut(s) 23, 47, 187
AcsI RAATTY 3 cut(s) 69, 132, 256
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 3 cut(s) 145, 157, 164
AluI AGCT 3 cut(s) 145, 157, 164
Alw21I GWGCWC 2 cut(s) 54, 166
Alw26I GTCTC 1 cut(s) 211
Alw44I GTGCAC 1 cut(s) 50
AoxI GGCC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 50
ApoI RAATTY 3 cut(s) 69, 132, 256
Asp700I GAANNNNTTC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 166
Bbv12I GWGCWC 2 cut(s) 54, 166
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 239
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 228
BseMII CTCAG 3 cut(s) 134, 155, 288
BseNI ACTGG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 54
BshFI GGCC 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 54, 166
BsiSI CCGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 130, 223
BsnI GGCC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 54, 166
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 3 cut(s) 23, 47, 187
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 3 cut(s) 133, 154, 287
BspQI GCTCTTC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 228
BssMI GATC 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 108, 120, 141, 274
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 35, 145, 157, 164, 242
CviKI_1 RGCY 5 cut(s) 35, 145, 157, 164, 242
DdeI CTNAG 4 cut(s) 108, 120, 141, 274
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 166
Eco53kI GAGCTC 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 1 cut(s) 119
FaiI YATR 3 cut(s) 117, 180, 182
FatI CATG 1 cut(s) 115
FauI CCCGC 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 166
FspBI CTAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 239
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 3 cut(s) 56, 112, 171
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 52, 175
Hpy188I TCNGA 5 cut(s) 100, 123, 170, 247, 277
Hpy8I GTNNAC 2 cut(s) 52, 175
HpyCH4V TGCA 3 cut(s) 52, 128, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 4 cut(s) 108, 120, 141, 274
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 3 cut(s) 241, 252, 264
MaeI CTAG 1 cut(s) 149
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 54, 166
MluCI AATT 4 cut(s) 69, 132, 256, 282
MlyI GAGTC 2 cut(s) 50, 180
MnlI CCTC 3 cut(s) 25, 253, 255
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 292
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 2 cut(s) 130, 223
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PctI GAATGC 2 cut(s) 130, 223
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 112
PleI GAGTC 2 cut(s) 50, 179
PpsI GAGTC 2 cut(s) 50, 179
Psp124BI GAGCTC 1 cut(s) 166
SacI GAGCTC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 292
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 2 cut(s) 50, 180
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 2 cut(s) 54, 166
SetI ASST 3 cut(s) 147, 159, 166
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 4 cut(s) 69, 132, 256, 282
SsiI CCGC 3 cut(s) 23, 47, 187
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 160
TasI AATT 4 cut(s) 69, 132, 256, 282
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TscAI CASTG 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 81, 104, 258
TspRI CASTG 1 cut(s) 225
VneI GTGCAC 1 cut(s) 50
XapI RAATTY 3 cut(s) 69, 132, 256
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.