Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

30034187 .. 30034627

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTGCAACCACAGTGACCCATACAAAAAACTCAGAGACTCAAGCTTCAAACTCATTCCAATTACCACCATTTGAAAATTCTCCGGAATCACAACCCAATTACCCAAATTTCCAAATTAGGGTTCTGAAAGACGACGGCCACCTCTGGAACAACCCGTATTCCCGGCCACCTCCCAATCGATACGAGCCGGAAGATGACAACGACACTATTGACGACAATCTGGACGAAGAGAATTACGGCCAAGACGACATCGTCGTGGAAGAGCAGTACCAACACTACCCGCACGACTTGAATCAGAGGGTGTATTTGGAGAAGTCGAATGGGCTTGATGAGATGAGGGATAGTCCAGGGGAGTCGGAGACGGATGAGAAGAGAATGAGAGTGAGCATAATGGGTTTGGGTTTAGGATTCCTCAAAAGTTCACCTCCACCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

146

Amino Acids

16.77

Weight (kDa)

4.38

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	1 cut(s)	284
AcoI	YGGCCR	3 cut(s)	139, 167, 241
AcsI	RAATTY	2 cut(s)	79, 109
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	3 cut(s)	51, 77, 295
AjnI	CCWGG	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw26I	GTCTC	2 cut(s)	32, 356
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	3 cut(s)	139, 167, 241
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	79, 109
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	417
BceAI	ACGGC	2 cut(s)	154, 256
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	32, 356
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	166, 351
BmrFI	CCNGG	2 cut(s)	166, 351
BpuEI	CTTGAG	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseAI	TCCGGA	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	141, 169, 243
BshVI	ATCGAT	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	86, 166, 191
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	2 cut(s)	32, 356
BsmBI	CGTCTC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	141, 169, 243
Bsp13I	TCCGGA	1 cut(s)	85
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	3 cut(s)	141, 169, 243
BspCNI	CTCAG	1 cut(s)	47
BspDI	ATCGAT	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	3 cut(s)	225, 258, 368
BstDEI	CTNAG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	32, 356
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	164, 349
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	3 cut(s)	141, 169, 243
BsuTUI	ATCGAT	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	7 cut(s)	5, 47, 141, 169, 190, 243, 328
CviKI_1	RGCY	7 cut(s)	5, 47, 141, 169, 190, 243, 328
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	3 cut(s)	139, 167, 241
Eam1104I	CTCTTC	3 cut(s)	225, 258, 368
EarI	CTCTTC	3 cut(s)	225, 258, 368
EcoRII	CCWGG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	356
FaeI	CATG	1 cut(s)	441
FaiI	YATR	3 cut(s)	24, 392, 439
FatI	CATG	1 cut(s)	437
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	141, 169, 243
HapII	CCGG	3 cut(s)	86, 166, 191
Hin1II	CATG	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	45
HinfI	GANTC	5 cut(s)	40, 89, 295, 356, 411
HpaII	CCGG	3 cut(s)	86, 166, 191
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	4 cut(s)	37, 129, 300, 361
Hpy188III	TCNNGA	3 cut(s)	86, 148, 224
Hpy8I	GTNNAC	1 cut(s)	425
Hpy99I	CGWCG	2 cut(s)	140, 260
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	441
Kpn2I	TCCGGA	1 cut(s)	85
LguI	GCTCTTC	1 cut(s)	258
LpnPI	CCDG	7 cut(s)	99, 133, 179, 204, 209, 336, 363
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	4 cut(s)	206, 242, 275, 385
MluCI	AATT	6 cut(s)	62, 79, 100, 109, 117, 235
MlyI	GAGTC	2 cut(s)	34, 365
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	6 cut(s)	155, 183, 294, 333, 425, 438
MroI	TCCGGA	1 cut(s)	85
MslI	CAYNNNNRTG	2 cut(s)	257, 436
MspI	CCGG	3 cut(s)	86, 166, 191
MspR9I	CCNGG	2 cut(s)	166, 351
MvaI	CCWGG	1 cut(s)	351
NciI	CCSGG	1 cut(s)	166
NlaIII	CATG	1 cut(s)	441
NmuCI	GTSAC	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 255
PfeI	GAWTC	3 cut(s)	89, 295, 411
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	34, 364
PpsI	GAGTC	2 cut(s)	34, 364
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	2 cut(s)	257, 436
SapI	GCTCTTC	1 cut(s)	258
SatI	GCNGC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	34, 365
ScrFI	CCNGG	2 cut(s)	166, 351
SetI	ASST	4 cut(s)	49, 147, 175, 430
SmiMI	CAYNNNNRTG	2 cut(s)	257, 436
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	6 cut(s)	62, 79, 100, 109, 117, 235
SsiI	CCGC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	164, 349
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	181, 320
TasI	AATT	6 cut(s)	62, 79, 100, 109, 117, 235
TfiI	GAWTC	3 cut(s)	89, 295, 411
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	380
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	79, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.