Rh4CG435100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006967
Physical Location & Seq
Forward (+)
67360110 .. 67363563
3454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG435100.1

Sequence Viewer

Length: 354 bp
ATGTACAAAGGAGGGTGTTTGCGGGTTCTGAAAGACGACGGCCACCTTTGGAACAACCGGTATTCCCGGCCACCTCCCAATCGATACGAGCAGGCAGACGACGACGACTCTATCCACGATGATCTGGACGAGGAGAATTACGGCCAAGACGACGTCTTCGTGGAAGCGCAGTACCAGCACTACCTGCACGACCTGAATCAGAGGGTGTATTTGGAGAAGTCGAATAGGTTTGATGAGATGGAGAAGTCGAATAGTCCAGGGGAGTCGGAGAAGGATGAGGAGGAGAAAGAGAGTGAGCAGAAAGGGTTTAGGATTCCTCAAAAGTTCACCTCCACCACCATCAGAGCCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.91

Weight (kDa)

4.66

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
Acc36I ACCTGC 1 cut(s) 192
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 3 cut(s) 40, 68, 142
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 5, 173
AgeI ACCGGT 1 cut(s) 57
AjnI CCWGG 1 cut(s) 256
AoxI GGCC 3 cut(s) 40, 68, 142
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsiGI ACCGGT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 169
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 148
BccI CCATC 2 cut(s) 232, 347
BceAI ACGGC 2 cut(s) 55, 157
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 192
Bme1390I CCNGG 2 cut(s) 67, 258
BmrFI CCNGG 2 cut(s) 67, 258
BpiI GAAGAC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 67
Bsa29I ATCGAT 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 257
BsaWI WCCGGW 1 cut(s) 57
Bse118I RCCGGY 1 cut(s) 57
BseBI CCWGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 1 cut(s) 280
BseRI GAGGAG 3 cut(s) 146, 293, 296
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 3 cut(s) 42, 70, 144
BshTI ACCGGT 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 82
BsiSI CCGG 2 cut(s) 58, 67
BsnI GGCC 3 cut(s) 42, 70, 144
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 22
BspANI GGCC 3 cut(s) 42, 70, 144
BspDI ATCGAT 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 57
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 184
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 93
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 175, 184
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 65, 256
BstV2I GAAGAC 1 cut(s) 148
Bsu15I ATCGAT 1 cut(s) 82
BsuRI GGCC 3 cut(s) 42, 70, 144
BsuTUI ATCGAT 1 cut(s) 82
BtsCI GGATG 1 cut(s) 280
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 4, 172
CspAI ACCGGT 1 cut(s) 57
CviJI RGCY 4 cut(s) 42, 70, 144, 347
CviKI_1 RGCY 4 cut(s) 42, 70, 144, 347
CviQI GTAC 2 cut(s) 4, 172
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 3 cut(s) 40, 68, 142
EcoRII CCWGG 1 cut(s) 256
FauI CCCGC 1 cut(s) 15
FokI GGATG 1 cut(s) 287
GlaI GCGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 42, 70, 144
HapII CCGG 2 cut(s) 58, 67
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 4 cut(s) 107, 196, 263, 313
HpaII CCGG 2 cut(s) 58, 67
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 4 cut(s) 30, 201, 268, 344
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 4 cut(s) 41, 104, 107, 155
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 184
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 9 cut(s) 71, 77, 80, 110, 188, 197, 206, 243, 270
MaeII ACGT 1 cut(s) 153
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 136
MlyI GAGTC 2 cut(s) 101, 272
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 5, 84, 124, 195, 271, 274, 327, 340
MspI CCGG 2 cut(s) 58, 67
MspR9I CCNGG 2 cut(s) 67, 258
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 175, 184
NciI CCSGG 1 cut(s) 67
NdeII GATC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 156
PfeI GAWTC 2 cut(s) 196, 313
PflFI GACNNNGTC 1 cut(s) 152
PinAI ACCGGT 1 cut(s) 57
PleI GAGTC 2 cut(s) 101, 271
PpsI GAGTC 2 cut(s) 101, 271
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 2 cut(s) 5, 173
RsaNI GTAC 2 cut(s) 4, 172
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 2 cut(s) 101, 272
ScrFI CCNGG 2 cut(s) 67, 258
SetI ASST 7 cut(s) 48, 76, 156, 186, 195, 230, 332
Sse9I AATT 1 cut(s) 136
SsiI CCGC 1 cut(s) 22
StyD4I CCNGG 2 cut(s) 65, 256
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 82, 221, 248
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 196, 313
Tth111I GACNNNGTC 1 cut(s) 152
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.