Rroxscaffold_7G00192620

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
33880865 .. 33883562
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192620.1

Sequence Viewer

Length: 297 bp
ATGCTTTTGGGTAGGGTTTCGGTGCCTTTGGATCTGGTGGATCTGGCAGGAACCAAGTCCAAGCCCAATGTGTTCCACAACCTGTCCTTATTATCTGGAATCAGAGCCCTTGCGCTCATGGGACCAAAGCCGAAAGGCGGTGGTGGTGCTTTGGTGACCCATGACTTAATGGTAGAGGAGTTGGATTACCTCGCTCAACAATCGCTATTTGACTATCAGATTCAAACTATGCGTGATTCTGTGGAGGAGATTCGTGCTGCTCAACAATCAATTCGTGCTCAAAATGCTGAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.66

Weight (kDa)

5.54

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 39, 48
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 2 cut(s) 39, 48
ApeKI GCWGC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 244
BfaI CTAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 24, 52, 123
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 191, 260
BseXI GCAGC 1 cut(s) 244
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 280
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 135
Bsp1286I GDGCHC 2 cut(s) 109, 280
Bsp143I GATC 2 cut(s) 31, 40
BspACI CCGC 1 cut(s) 138
BspLI GGNNCC 3 cut(s) 24, 52, 123
BspPI GGATC 2 cut(s) 39, 48
BspT107I GGYRCC 1 cut(s) 22
BssMI GATC 2 cut(s) 31, 40
BstEII GGTNACC 1 cut(s) 154
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 34, 43
BstMBI GATC 2 cut(s) 31, 40
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstPI GGTNACC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 244
BstX2I RGATCY 2 cut(s) 31, 40
BstYI RGATCY 2 cut(s) 31, 40
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 2 cut(s) 118, 161
CviJI RGCY 3 cut(s) 64, 107, 130
CviKI_1 RGCY 3 cut(s) 64, 107, 130
DpnI GATC 2 cut(s) 33, 42
DpnII GATC 2 cut(s) 31, 40
Eco24I GRGCYC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 122
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 109
FaeI CATG 2 cut(s) 121, 164
FaiI YATR 3 cut(s) 119, 162, 230
FaqI GGGAC 1 cut(s) 135
FatI CATG 2 cut(s) 117, 160
Fnu4HI GCNGC 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 295
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 121, 164
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 4 cut(s) 99, 220, 236, 250
HphI GGTGA 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 104, 219
Hpy188III TCNNGA 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 121, 164
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 31, 40
LpnPI CCDG 5 cut(s) 20, 29, 33, 81, 95
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 33, 42
MboI GATC 2 cut(s) 31, 40
MflI RGATCY 2 cut(s) 31, 40
MhlI GDGCHC 2 cut(s) 109, 280
MluCI AATT 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 3 cut(s) 169, 200, 238
MseI TTAA 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 2 cut(s) 31, 40
NlaIII CATG 2 cut(s) 121, 164
NlaIV GGNNCC 3 cut(s) 24, 52, 123
NmuCI GTSAC 1 cut(s) 154
PfeI GAWTC 4 cut(s) 99, 220, 236, 250
PkrI GCNGC 1 cut(s) 259
PspEI GGTNACC 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 24, 52, 123
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 2 cut(s) 31, 40
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 31, 40
Sau96I GGNCC 1 cut(s) 122
SduI GDGCHC 2 cut(s) 109, 280
SetI ASST 2 cut(s) 84, 192
SinI GGWCC 1 cut(s) 122
Sse9I AATT 1 cut(s) 270
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 295
TasI AATT 1 cut(s) 270
TfiI GAWTC 4 cut(s) 99, 220, 236, 250
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 122
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.