RchiOBHm_Chr5g0018841

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
13325869 .. 13326685
817 bp
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UTR
Exon/CDS
Intron
PRQ29900

Sequence Viewer

Length: 177 bp
ATGCCAAAGCTGAAAGGCGGTGGTGGTCCTCCGGTGTCCCGTGACTTAACGGCGATGGAGTTGGATTATCTCGCTCAACAATCGTTGTTTGACTCTCAGATTCAAACCATGCGTGATTCTGTGGAGGAGATTCGTGCTGCTCAAGAATCTCTTCGTGCTCAAAATGTTGAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.41

Weight (kDa)

4.61

Isoelectric Point (pI)

69.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 18
AgsI TTSAA 2 cut(s) 104, 170
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 124
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 66
BfaI CTAG 1 cut(s) 175
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 31
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 160
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 26
CviAII CATG 1 cut(s) 109
CviJI RGCY 1 cut(s) 10
CviKI_1 RGCY 1 cut(s) 10
DdeI CTNAG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 26
FaeI CATG 1 cut(s) 112
FaiI YATR 1 cut(s) 110
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 1 cut(s) 175
GluI GCNGC 1 cut(s) 138
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 112
HinfI GANTC 5 cut(s) 92, 100, 116, 130, 146
HpaII CCGG 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 112
LpnPI CCDG 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 124
MaeI CTAG 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 41
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 160
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 39, 118
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 47
MspI CCGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 4 cut(s) 100, 116, 130, 146
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 160
SetI ASST 2 cut(s) 12, 176
SgeI CNNG 9 cut(s) 44, 51, 53, 83, 121, 125, 146, 155, 167
SinI GGWCC 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 175
TfiI GAWTC 4 cut(s) 100, 116, 130, 146
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.