Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002934.1

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

174963 .. 175316

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002934.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtttaattatgatatatcacagctttatctttcttctgctatttcctcgctcttttcttgtatttttgggtttggacccttattatctggcatcggagccgtcggtatcatgggaccggcgcgtaagggaggcaccacccatcatacgtcgaaggatctttcagcggtggaaatggattctttggcgcaacagacagtggccgaaggccaacttcaagcggttcgtgactccgtcgacgagattcgtgcttctcacgagcgtatgcgttctgagaacgctgaaattcaagctcagaaagctgaatttcagtctcagttgctcgacgaacttcgtgctcttctagttacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.69

Weight (kDa)

5.02

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	124
AciI	CCGC	2 cut(s)	167, 221
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	285, 305
AgsI	TTSAA	2 cut(s)	218, 290
AluBI	AGCT	3 cut(s)	25, 293, 302
AluI	AGCT	3 cut(s)	25, 293, 302
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	201, 208
ApoI	RAATTY	2 cut(s)	285, 305
AspLEI	GCGC	2 cut(s)	124, 190
AspS9I	GGNCC	2 cut(s)	77, 116
AvaII	GGWCC	2 cut(s)	77, 116
BanI	GGYRCC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	340
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	86
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 317, 351
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	344
Bme18I	GGWCC	2 cut(s)	77, 116
BmgT120I	GGNCC	2 cut(s)	77, 116
BmiI	GGNNCC	4 cut(s)	79, 100, 117, 136
BmsI	GCATC	1 cut(s)	102
Bse118I	RCCGGY	1 cut(s)	118
BseMII	CTCAG	3 cut(s)	264, 308, 329
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	203, 210
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	203, 210
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	167, 221
BspANI	GGCC	2 cut(s)	203, 210
BspCNI	CTCAG	3 cut(s)	265, 307, 328
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	4 cut(s)	79, 100, 117, 136
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	118
BssMI	GATC	1 cut(s)	157
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	273, 294, 315
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	124, 190
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	203, 210
BtsIMutI	CAGTG	1 cut(s)	204
CfoI	GCGC	2 cut(s)	124, 190
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	77, 116
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	6 cut(s)	25, 101, 203, 210, 293, 302
CviKI_1	RGCY	6 cut(s)	25, 101, 203, 210, 293, 302
DdeI	CTNAG	3 cut(s)	273, 294, 315
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	2 cut(s)	77, 116
FaeI	CATG	1 cut(s)	115
FaiI	YATR	6 cut(s)	12, 17, 113, 147, 266, 352
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	2 cut(s)	123, 189
HaeIII	GGCC	2 cut(s)	203, 210
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	2 cut(s)	124, 190
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	2 cut(s)	122, 188
HinP1I	GCGC	2 cut(s)	122, 188
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	179, 230, 244
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	98, 274, 297
Hpy188III	TCNNGA	2 cut(s)	227, 257
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	5 cut(s)	107, 154, 239, 242, 329
HpyAV	CCTTC	2 cut(s)	148, 200
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	3 cut(s)	273, 294, 315
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	2 cut(s)	122, 188
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	2 cut(s)	75, 132
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	227, 346
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	27, 332
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	3 cut(s)	7, 285, 305
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	58, 125
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	4 cut(s)	79, 100, 117, 136
NmuCI	GTSAC	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	179, 244
PflFI	GACNNNGTC	1 cut(s)	233
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	79, 100, 117, 136
PspPI	GGNCC	2 cut(s)	77, 116
PsuI	RGATCY	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	233
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	77, 116
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	4 cut(s)	27, 152, 295, 304
SfaNI	GCATC	1 cut(s)	102
SgrDI	CGTCGACG	1 cut(s)	236
SinI	GGWCC	2 cut(s)	77, 116
Sse9I	AATT	3 cut(s)	7, 285, 305
SsiI	CCGC	2 cut(s)	167, 221
SspMI	CTAG	1 cut(s)	344
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	3 cut(s)	152, 237, 324
TasI	AATT	3 cut(s)	7, 285, 305
TfiI	GAWTC	2 cut(s)	179, 244
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	77, 116
XapI	RAATTY	2 cut(s)	285, 305
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.