Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012521.1

Orthogroup ID

OG0006967

Physical Location & Seq

Genomic Coordinates Forward (+)

31681 .. 32805

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012521.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgggaccgtcgcgtaagggtggcaccaatcctcagtcgtcgaaggaactttcggctgctgagatggattatttggcacaacaagcggtggccgaggctcaacttcaggcggtgcgcgactcggttgatgaaattcgggccgctcaagcttcgatccgctctgaaaatgctgagattcatgctcagaatgcagaattccgctctcagctacttgaagagcttcgagctctcagaccccgctctgactctattccagtctctccgaacccgctgcctcccagctctctcccggcctttgatctggcaaatttgagggtttcatcctcagaaccaatttatcctcacgggttgggagtcttaagcatcacttcagcggaagtctcttcaggtatactcgttccttcagcggaaatctcctcaggtatactcgctccttctgcagctcctgctatgcccatttctagtctttctgctactactcatgttagatctggagctagtagtactcgtatacaaaatggtaaagtggttgctactggtggcagtcccgttgttgttagtgatatgtcatgtagggaaagattgttgaatgatgcatttcaatctagagatagagttgaagggtatgattacggtggatttccatatcaacctcattattatcaacatactgtggttcctaatcattatactaatttgtcagcttataatccacaatttgttcatggcttacctacatcatctatgcactatgtccatggaaactctgtatttgagggtcccttacagcaaggccagtctagtcactcttcagctgtacctccatggcaactatcctcgagcacatccaactatcaggagcaaaattttaggcctacgttaccgtttgctatgaatcattaccttacatcacagatgtctactcagtccattccatcttatgcaccaccaacatactccacaattccatcttcttatacgcgcttccagcaaccacagctctaccaagcaccacaaccacagtacccttactgtcaaaatcaatttcacggaggtcccttgccgcaaggacctcaatttcaaggccaggctgagatggatcctaatcttccaactatgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

40.65

Weight (kDa)

6.04

Isoelectric Point (pI)

69.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0451501 RchiOBHm_Chr3g0478591 RchiOBHm_Chr4g0415941 RchiOBHm_Chr5g0018841
rosa_laevigata	RLG00000004493 RLG00000013536
rosa_multiflora	Rmu_sc0000200.1_g000014 Rmu_sc0001488.1_g000024 Rmu_sc0002934.1_g000046 Rmu_sc0003822.1_g000025 Rmu_sc0004094.1_g000027 Rmu_sc0012521.1_g000009 Rmu_sc0031157.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018770 Rroxscaffold_2G00080230 Rroxscaffold_2G00093080 Rroxscaffold_2G00108020 Rroxscaffold_2G00131900 Rroxscaffold_7G00190550 Rroxscaffold_7G00192620 Rroxscaffold_7G00194150 Rroxscaffold_7G00214830
rosa_rugosa	Rorug07G0096500
rosa_samantha	Rh4CG435100 Rh7AG275300 Rh7CG294100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	4 cut(s)	143, 159, 201, 240
AccI	GTMKAC	4 cut(s)	391, 424, 511, 920
AccII	CGCG	3 cut(s)	13, 117, 982
AclWI	GGATC	3 cut(s)	148, 1094, 1107
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	4 cut(s)	132, 194, 307, 865
AcuI	CTGAAG	5 cut(s)	89, 354, 369, 387, 795
AfaI	GTAC	3 cut(s)	505, 819, 1025
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	5 cut(s)	215, 589, 602, 620, 1082
AjnI	CCWGG	1 cut(s)	1086
Alw21I	GWGCWC	2 cut(s)	229, 845
Alw26I	GTCTC	2 cut(s)	262, 385
AlwI	GGATC	3 cut(s)	148, 1094, 1107
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	838
AoxI	GGCC	6 cut(s)	90, 138, 291, 793, 872, 1084
ApeKI	GCWGC	3 cut(s)	56, 271, 440
ApoI	RAATTY	4 cut(s)	132, 194, 307, 865
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	117, 984
AspS9I	GGNCC	5 cut(s)	5, 138, 779, 1055, 1070
AsuC2I	CCSGG	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	838
AvaII	GGWCC	4 cut(s)	5, 779, 1055, 1070
AxyI	CCTNAGG	1 cut(s)	418
BaeI	ACNNNNGTAYC	2 cut(s)	1007, 1040
BamHI	GGATCC	1 cut(s)	1099
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	229, 845
BbvI	GCAGC	3 cut(s)	43, 258, 452
BccI	CCATC	4 cut(s)	58, 943, 976, 1090
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	1088
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	262, 385
BfaI	CTAG	4 cut(s)	462, 498, 606, 801
BfmI	CTRYAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	358
BglII	AGATCT	1 cut(s)	488
BisI	GCNGC	5 cut(s)	57, 141, 272, 441, 1064
BlsI	GCNGC	5 cut(s)	58, 142, 273, 442, 1065
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	290, 1088
Bme18I	GGWCC	4 cut(s)	5, 779, 1055, 1070
BmeT110I	CYCGRG	1 cut(s)	838
BmgT120I	GGNCC	5 cut(s)	5, 138, 779, 1055, 1070
BmiI	GGNNCC	7 cut(s)	6, 25, 678, 780, 781, 1057, 1101
BmrFI	CCNGG	2 cut(s)	290, 1088
BmsI	GCATC	2 cut(s)	372, 583
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	1104
BsaJI	CCNNGG	3 cut(s)	93, 757, 824
Bse1I	ACTGG	3 cut(s)	254, 541, 796
Bse21I	CCTNAGG	1 cut(s)	418
Bse8I	GATNNNNATC	1 cut(s)	1104
BseBI	CCWGG	1 cut(s)	1088
BseDI	CCNNGG	3 cut(s)	93, 757, 824
BseGI	GGATG	2 cut(s)	320, 845
BseJI	GATNNNNATC	1 cut(s)	1104
BseNI	ACTGG	3 cut(s)	254, 541, 796
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	3 cut(s)	43, 258, 452
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	3 cut(s)	13, 117, 982
BshFI	GGCC	6 cut(s)	92, 140, 293, 795, 874, 1086
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	2 cut(s)	229, 845
BsiHKCI	CYCGRG	1 cut(s)	838
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	4 cut(s)	18, 531, 765, 1041
BsmAI	GTCTC	2 cut(s)	262, 385
BsmFI	GGGAC	4 cut(s)	18, 531, 765, 1041
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	6 cut(s)	92, 140, 293, 795, 874, 1086
BsoBI	CYCGRG	1 cut(s)	838
Bsp1286I	GDGCHC	2 cut(s)	229, 845
Bsp143I	GATC	4 cut(s)	153, 298, 488, 1099
Bsp19I	CCATGG	2 cut(s)	757, 824
BspANI	GGCC	6 cut(s)	92, 140, 293, 795, 874, 1086
BspFNI	CGCG	3 cut(s)	13, 117, 982
BspLI	GGNNCC	7 cut(s)	6, 25, 678, 780, 781, 1057, 1101
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	3 cut(s)	148, 1094, 1107
BspQI	GCTCTTC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	358
BsrBI	CCGCTC	4 cut(s)	143, 159, 201, 240
BsrI	ACTGG	3 cut(s)	254, 541, 796
BssECI	CCNNGG	3 cut(s)	93, 757, 824
BssMI	GATC	4 cut(s)	153, 298, 488, 1099
BssNAI	GTATAC	3 cut(s)	392, 425, 512
BssT1I	CCWWGG	2 cut(s)	757, 824
Bst1107I	GTATAC	3 cut(s)	392, 425, 512
Bst2UI	CCWGG	1 cut(s)	1088
Bst4CI	ACNGT	6 cut(s)	9, 635, 673, 885, 1023, 1034
Bst6I	CTCTTC	3 cut(s)	210, 388, 814
BstAFI	CTTAAG	1 cut(s)	358
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDSI	CCRYGG	2 cut(s)	757, 824
BstF5I	GGATG	2 cut(s)	320, 845
BstFNI	CGCG	3 cut(s)	13, 117, 982
BstHHI	GCGC	2 cut(s)	117, 984
BstKTI	GATC	4 cut(s)	156, 301, 491, 1102
BstMAI	GTCTC	2 cut(s)	262, 385
BstMBI	GATC	4 cut(s)	153, 298, 488, 1099
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 146, 188, 437, 446, 988, 997
BstNI	CCWGG	1 cut(s)	1088
BstSCI	CCNGG	2 cut(s)	288, 1086
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	3 cut(s)	13, 117, 982
BstV1I	GCAGC	3 cut(s)	43, 258, 452
BstX2I	RGATCY	2 cut(s)	488, 1099
BstYI	RGATCY	2 cut(s)	488, 1099
BstZ17I	GTATAC	3 cut(s)	392, 425, 512
Bsu36I	CCTNAGG	1 cut(s)	418
BsuRI	GGCC	6 cut(s)	92, 140, 293, 795, 874, 1086
BtgI	CCRYGG	2 cut(s)	757, 824
BtsCI	GGATG	2 cut(s)	320, 845
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	2 cut(s)	117, 984
Cfr13I	GGNCC	5 cut(s)	5, 138, 779, 1055, 1070
Csp6I	GTAC	3 cut(s)	504, 818, 1024
CviAII	CATG	6 cut(s)	179, 482, 570, 725, 758, 825
CviQI	GTAC	3 cut(s)	504, 818, 1024
DpnI	GATC	4 cut(s)	155, 300, 490, 1101
DpnII	GATC	4 cut(s)	153, 298, 488, 1099
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	3 cut(s)	210, 388, 814
EarI	CTCTTC	3 cut(s)	210, 388, 814
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	757, 824
Eco147I	AGGCCT	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	229
Eco47I	GGWCC	4 cut(s)	5, 779, 1055, 1070
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	5 cut(s)	89, 354, 369, 387, 795
Eco81I	CCTNAGG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	838
EcoICRI	GAGCTC	1 cut(s)	227
EcoO109I	RGGNCCY	3 cut(s)	779, 1055, 1070
EcoRI	GAATTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	1086
EcoT14I	CCWWGG	2 cut(s)	757, 824
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	757, 824
FaeI	CATG	6 cut(s)	182, 485, 573, 728, 761, 828
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FaqI	GGGAC	4 cut(s)	18, 531, 765, 1041
FatI	CATG	6 cut(s)	178, 481, 569, 724, 757, 824
FauI	CCCGC	2 cut(s)	245, 276
FblI	GTMKAC	4 cut(s)	391, 424, 511, 920
Fnu4HI	GCNGC	5 cut(s)	57, 141, 272, 441, 1064
FokI	GGATG	2 cut(s)	307, 832
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	57, 141, 272, 441, 1064
FspBI	CTAG	4 cut(s)	462, 498, 606, 801
GlaI	GCGC	2 cut(s)	116, 983
GluI	GCNGC	5 cut(s)	57, 141, 272, 441, 1064
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	6 cut(s)	92, 140, 293, 795, 874, 1086
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	2 cut(s)	117, 984
Hin1II	CATG	6 cut(s)	182, 485, 573, 728, 761, 828
Hin6I	GCGC	2 cut(s)	115, 982
HinP1I	GCGC	2 cut(s)	115, 982
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	5 cut(s)	119, 175, 245, 354, 895
HpaII	CCGG	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	392, 425, 512, 921
Hpy188I	TCNGA	6 cut(s)	163, 186, 233, 244, 264, 328
Hpy188III	TCNNGA	3 cut(s)	492, 606, 857
Hpy8I	GTNNAC	4 cut(s)	392, 425, 512, 921
Hpy99I	CGWCG	2 cut(s)	13, 43
HpyAV	CCTTC	4 cut(s)	37, 411, 444, 614
HpyCH4III	ACNGT	6 cut(s)	9, 635, 673, 885, 1023, 1034
HpyCH4IV	ACGT	1 cut(s)	878
HpyCH4V	TGCA	5 cut(s)	191, 440, 596, 748, 944
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 146, 188, 437, 446, 988, 997
HpySE526I	ACGT	1 cut(s)	878
Hsp92II	CATG	6 cut(s)	182, 485, 573, 728, 761, 828
HspAI	GCGC	2 cut(s)	115, 982
KflI	GGGWCCC	1 cut(s)	779
Kzo9I	GATC	4 cut(s)	153, 298, 488, 1099
LguI	GCTCTTC	1 cut(s)	210
LmnI	GCTCC	4 cut(s)	436, 448, 494, 859
Lsp1109I	GCAGC	3 cut(s)	43, 258, 452
LweI	GCATC	2 cut(s)	372, 583
MaeI	CTAG	4 cut(s)	462, 498, 606, 801
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	2 cut(s)	803, 879
MalI	GATC	4 cut(s)	155, 300, 490, 1101
MbiI	CCGCTC	4 cut(s)	143, 159, 201, 240
MboI	GATC	4 cut(s)	153, 298, 488, 1099
MboII	GAAGA	5 cut(s)	227, 375, 801, 963, 1100
MflI	RGATCY	2 cut(s)	488, 1099
MhlI	GDGCHC	2 cut(s)	229, 845
MlyI	GAGTC	3 cut(s)	113, 239, 363
MmeI	TCCRAC	1 cut(s)	873
Mph1103I	ATGCAT	1 cut(s)	598
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	359
MspA1I	CMGCKG	4 cut(s)	271, 374, 407, 815
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	290, 1088
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	1088
MvnI	CGCG	3 cut(s)	13, 117, 982
MwoI	GCNNNNNNNGC	7 cut(s)	83, 146, 188, 437, 446, 988, 997
NciI	CCSGG	1 cut(s)	290
NcoI	CCATGG	2 cut(s)	757, 824
NdeII	GATC	4 cut(s)	153, 298, 488, 1099
NlaIII	CATG	6 cut(s)	182, 485, 573, 728, 761, 828
NlaIV	GGNNCC	7 cut(s)	6, 25, 678, 780, 781, 1057, 1101
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	803
NsiI	ATGCAT	1 cut(s)	598
PaeR7I	CTCGAG	1 cut(s)	838
PceI	AGGCCT	1 cut(s)	874
PciSI	GCTCTTC	1 cut(s)	210
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	175, 895
PkrI	GCNGC	5 cut(s)	58, 142, 273, 442, 1065
PleI	GAGTC	3 cut(s)	113, 239, 362
PpsI	GAGTC	3 cut(s)	113, 239, 362
PpuMI	RGGWCCY	3 cut(s)	779, 1055, 1070
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	229
Psp5II	RGGWCCY	3 cut(s)	779, 1055, 1070
Psp6I	CCWGG	1 cut(s)	1086
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	1086
PspN4I	GGNNCC	7 cut(s)	6, 25, 678, 780, 781, 1057, 1101
PspPI	GGNCC	5 cut(s)	5, 138, 779, 1055, 1070
PspPPI	RGGWCCY	3 cut(s)	779, 1055, 1070
PspXI	VCTCGAGB	1 cut(s)	838
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	488, 1099
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	3 cut(s)	505, 819, 1025
RsaNI	GTAC	3 cut(s)	504, 818, 1024
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	5 cut(s)	57, 141, 272, 441, 1064
Sau3AI	GATC	4 cut(s)	153, 298, 488, 1099
Sau96I	GGNCC	5 cut(s)	5, 138, 779, 1055, 1070
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	3 cut(s)	113, 239, 363
ScrFI	CCNGG	2 cut(s)	290, 1088
SduI	GDGCHC	2 cut(s)	229, 845
SfaNI	GCATC	2 cut(s)	372, 583
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	838
SinI	GGWCC	4 cut(s)	5, 779, 1055, 1070
SlaI	CTCGAG	1 cut(s)	838
SmlI	CTYRAG	3 cut(s)	144, 358, 838
SmoI	CTYRAG	3 cut(s)	144, 358, 838
SseBI	AGGCCT	1 cut(s)	874
SspMI	CTAG	4 cut(s)	462, 498, 606, 801
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	2 cut(s)	288, 1086
StyI	CCWWGG	2 cut(s)	757, 824
TaaI	ACNGT	6 cut(s)	9, 635, 673, 885, 1023, 1034
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	4 cut(s)	41, 152, 223, 839
TatI	WGTACW	1 cut(s)	503
TauI	GCSGC	2 cut(s)	143, 1066
TfiI	GAWTC	2 cut(s)	175, 895
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	3 cut(s)	56, 271, 440
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	5 cut(s)	144, 167, 309, 713, 908
TspGWI	ACGGA	1 cut(s)	1065
Vha464I	CTTAAG	1 cut(s)	358
VpaK11BI	GGWCC	4 cut(s)	5, 779, 1055, 1070
XapI	RAATTY	4 cut(s)	132, 194, 307, 865
XbaI	TCTAGA	1 cut(s)	605
XhoI	CTCGAG	1 cut(s)	838
XmiI	GTMKAC	4 cut(s)	391, 424, 511, 920
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	4 cut(s)	462, 498, 606, 801
ZrmI	AGTACT	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.