Rroxscaffold_2G00080230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006967
Physical Location & Seq
Forward (+)
3169655 .. 3176654
7000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080230.1

Sequence Viewer

Length: 1083 bp
ATGCGTGTTTCTGTGGAGGAGATTCGTGCTGCTCAAGACTCACTTCGTGCTCAAAATGCTGATATCCAGAGCAAAAACGCTGAGATGCAGACTCGGCTGCTTGAAGAACTTCATCAGCTTCGGCTTGCTTCTTTACGACCGGAGACCGATCCAAATTCCCCCAACCATCTTCGTTTTGGCTCTCTGCCCATCTCTGAAGTAGGTACCCAAGGATTTCTTGCCTCCGAACCTATTCCAGTAGCTGGCATGGGAGTATTAAGCACTATGTCTGAAGGGGGTCCTTCTGGGTTCTCTCTACCTAGCACGGCAGTTCCTACTTCTTCTGTGTCGGTACCGCCTTCCCCACCCTCCTCACAGGTAGCTTCTGGTGGCAGTCTAAGTCACCAAAGAGGTAAATCCATTGCTAGTACCGCTGCTACTACTGATGTTGTTACTGGATCTGTTGGTCATAGTGAAAGGTTAATGGGTGATGCTTTTAGAGCTAGAGATAGGGAAGAACGACATGATTACGGTGGCTTTCCTTATCAATCTAATTTTTATCAGCATACCGTAGCTCCCAATCATTATACTAACATACCTGCTTATAATTCTCAATTTATTCATGGTATACCTGTGTCACATATGCACTATGTTCATGGAACTTCTATTTTGGGAGGGCCACTACAGCAAGGACAGTCTAGCAATTCTTCAATGATACCTCCATGGCAATTTCCATCGAGTAATCTTAATTTTCAGGAACAGATGGCCAGACCTTCATTACCATTTGCAGTGAATCATTACTTAACATCACAATTGTCGACTCAACCCATACCAGCTCAGGCTTCATCTACCTATTCCACCATTTCAACACCGTACTCTCATTTTCAACCTCCGCAGTTTTCGCAAGCACAGCATGCTCACTATCAGGTTCCGGGTCGAACTCTAGGAGGATCCAGCGATGGTGGAGGAGCGCTCGAGGCCGCCAGAATAATGATTGGCGAGGCTGCCTTCTGGGAAGGCTGGTCTTGTCCGGCTGATGTGAGGAAGATGGATCTCGACAGTGGGCTTGGGCCTCTGCCTTGCTGGGTTGTGTTTGCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

38.64

Weight (kDa)

6.08

Isoelectric Point (pI)

59.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 585
Acc36I ACCTGC 1 cut(s) 586
Acc65I GGTACC 2 cut(s) 203, 331
AccB1I GGYRCC 2 cut(s) 203, 331
AccB7I CCANNNNNTGG 1 cut(s) 242
AccI GTMKAC 2 cut(s) 607, 797
AciI CCGC 4 cut(s) 335, 411, 872, 960
AclWI GGATC 5 cut(s) 143, 445, 924, 937, 1038
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 216, 291
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 4 cut(s) 205, 333, 409, 854
AfeI AGCGCT 1 cut(s) 951
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 4 cut(s) 104, 690, 846, 866
AluBI AGCT 6 cut(s) 118, 242, 362, 482, 554, 815
AluI AGCT 6 cut(s) 118, 242, 362, 482, 554, 815
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 5 cut(s) 143, 445, 924, 937, 1038
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 953
Aor51HI AGCGCT 1 cut(s) 951
AoxI GGCC 4 cut(s) 656, 744, 957, 1049
ApeKI GCWGC 5 cut(s) 29, 97, 413, 983, 1076
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 2 cut(s) 108, 231
Asp718I GGTACC 2 cut(s) 203, 331
AspLEI GCGC 1 cut(s) 952
AspS9I GGNCC 3 cut(s) 278, 656, 1049
AsuC2I CCSGG 1 cut(s) 912
AsuHPI GGTGA 2 cut(s) 374, 479
AvaI CYCGRG 1 cut(s) 953
AvaII GGWCC 1 cut(s) 278
BalI TGGCCA 1 cut(s) 746
BamHI GGATCC 1 cut(s) 929
BanI GGYRCC 2 cut(s) 203, 331
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 4 cut(s) 16, 84, 400, 970
BccI CCATC 6 cut(s) 174, 197, 721, 736, 932, 1021
BceAI ACGGC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 912
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 6 cut(s) 300, 405, 483, 678, 923, 1081
BfmI CTRYAG 1 cut(s) 662
BfoI RGCGCY 1 cut(s) 953
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 6 cut(s) 30, 98, 414, 960, 984, 1077
BlsI GCNGC 6 cut(s) 31, 99, 415, 961, 985, 1078
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 953
BmgT120I GGNCC 3 cut(s) 278, 656, 1049
BmiI GGNNCC 5 cut(s) 205, 279, 333, 909, 931
BmrFI CCNGG 1 cut(s) 912
BmsI GCATC 2 cut(s) 75, 460
BplI GAGNNNNNCTC 2 cut(s) 936, 968
Bpu10I CCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 208, 701
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 236, 439
Bse3DI GCAATG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 208, 701
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 72, 830
BseNI ACTGG 2 cut(s) 236, 439
BseRI GAGGAG 3 cut(s) 32, 340, 960
BseXI GCAGC 4 cut(s) 16, 84, 400, 970
BseYI CCCAGC 1 cut(s) 1062
Bsh1285I CGRYCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 658, 746, 959, 1051
BshNI GGYRCC 2 cut(s) 203, 331
BsiEI CGRYCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 52
BsiHKCI CYCGRG 1 cut(s) 953
BsiSI CCGG 3 cut(s) 140, 911, 1010
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 4 cut(s) 658, 746, 959, 1051
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 1 cut(s) 953
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 4 cut(s) 148, 437, 929, 1030
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 4 cut(s) 335, 411, 872, 960
BspANI GGCC 4 cut(s) 658, 746, 959, 1051
BspCNI CTCAG 2 cut(s) 73, 829
BspLI GGNNCC 5 cut(s) 205, 279, 333, 909, 931
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 5 cut(s) 143, 445, 924, 937, 1038
BspT107I GGYRCC 2 cut(s) 203, 331
BspTNI GGTCTC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 2 cut(s) 236, 439
BssECI CCNNGG 2 cut(s) 208, 701
BssMI GATC 4 cut(s) 148, 437, 929, 1030
BssNAI GTATAC 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 208, 701
Bst1107I GTATAC 1 cut(s) 608
Bst4CI ACNGT 5 cut(s) 512, 550, 675, 852, 1040
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 4 cut(s) 126, 244, 885, 894
BstDEI CTNAG 3 cut(s) 81, 377, 816
BstDSI CCRYGG 1 cut(s) 701
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 4 cut(s) 151, 440, 932, 1033
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 148, 437, 929, 1030
BstMCI CGRYCG 1 cut(s) 140
BstMWI GCNNNNNNNGC 9 cut(s) 56, 94, 410, 479, 664, 880, 889, 893, 956
BstNSI RCATGY 1 cut(s) 896
BstSCI CCNGG 1 cut(s) 910
BstSFI CTRYAG 1 cut(s) 662
BstV1I GCAGC 4 cut(s) 16, 84, 400, 970
BstX2I RGATCY 3 cut(s) 437, 929, 1030
BstYI RGATCY 3 cut(s) 437, 929, 1030
BstZ17I GTATAC 1 cut(s) 608
BsuRI GGCC 4 cut(s) 658, 746, 959, 1051
BtgI CCRYGG 1 cut(s) 701
BtgZI GCGATG 1 cut(s) 951
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 2 cut(s) 774, 1045
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 4 cut(s) 126, 244, 885, 894
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 952
Cfr13I GGNCC 3 cut(s) 278, 656, 1049
Csp6I GTAC 4 cut(s) 204, 332, 408, 853
CviAII CATG 6 cut(s) 247, 503, 602, 635, 702, 893
CviQI GTAC 4 cut(s) 204, 332, 408, 853
DdeI CTNAG 3 cut(s) 81, 377, 816
DpnI GATC 4 cut(s) 150, 439, 931, 1032
DpnII GATC 4 cut(s) 148, 437, 929, 1030
DraIII CACNNNGTG 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 208, 701
Eco31I GGTCTC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 951
Eco57I CTGAAG 2 cut(s) 216, 291
Eco88I CYCGRG 1 cut(s) 953
EcoO109I RGGNCCY 1 cut(s) 278
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 208, 701
ErhI CCWWGG 2 cut(s) 208, 701
FaeI CATG 6 cut(s) 250, 506, 605, 638, 705, 896
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 201, 233
FatI CATG 6 cut(s) 246, 502, 601, 634, 701, 892
FauNDI CATATG 1 cut(s) 621
FblI GTMKAC 2 cut(s) 607, 797
Fnu4HI GCNGC 6 cut(s) 30, 98, 414, 960, 984, 1077
Fsp4HI GCNGC 6 cut(s) 30, 98, 414, 960, 984, 1077
FspBI CTAG 6 cut(s) 300, 405, 483, 678, 923, 1081
GlaI GCGC 1 cut(s) 951
GluI GCNGC 6 cut(s) 30, 98, 414, 960, 984, 1077
GsaI CCCAGC 1 cut(s) 1066
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 4 cut(s) 658, 746, 959, 1051
HapII CCGG 3 cut(s) 140, 911, 1010
HhaI GCGC 1 cut(s) 952
Hin1II CATG 6 cut(s) 250, 506, 605, 638, 705, 896
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HinfI GANTC 5 cut(s) 22, 38, 91, 772, 799
HpaII CCGG 3 cut(s) 140, 911, 1010
HphI GGTGA 2 cut(s) 374, 479
Hpy166II GTNNAC 2 cut(s) 608, 798
Hpy188I TCNGA 3 cut(s) 196, 226, 271
Hpy188III TCNNGA 4 cut(s) 35, 67, 734, 1034
Hpy8I GTNNAC 2 cut(s) 608, 798
HpyAV CCTTC 6 cut(s) 266, 291, 348, 762, 989, 997
HpyCH4III ACNGT 5 cut(s) 512, 550, 675, 852, 1040
HpyCH4V TGCA 4 cut(s) 88, 625, 767, 1076
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 94, 410, 479, 664, 880, 889, 893, 956
HpyF3I CTNAG 3 cut(s) 81, 377, 816
Hsp92II CATG 6 cut(s) 250, 506, 605, 638, 705, 896
HspAI GCGC 1 cut(s) 950
KpnI GGTACC 2 cut(s) 207, 335
Kzo9I GATC 4 cut(s) 148, 437, 929, 1030
LmnI GCTCC 2 cut(s) 559, 947
Lsp1109I GCAGC 4 cut(s) 16, 84, 400, 970
LweI GCATC 2 cut(s) 75, 460
MaeI CTAG 6 cut(s) 300, 405, 483, 678, 923, 1081
MaeIII GTNAC 3 cut(s) 380, 430, 615
MalI GATC 4 cut(s) 150, 439, 931, 1032
MboI GATC 4 cut(s) 148, 437, 929, 1030
MboII GAAGA 6 cut(s) 116, 161, 312, 506, 678, 1036
MfeI CAATTG 1 cut(s) 791
MflI RGATCY 3 cut(s) 437, 929, 1030
MhlI GDGCHC 1 cut(s) 52
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 8 cut(s) 154, 532, 586, 593, 682, 707, 727, 791
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 3 cut(s) 32, 85, 793
Mox20I TGGCCA 1 cut(s) 746
MroXI GAANNNNTTC 2 cut(s) 108, 231
MscI TGGCCA 1 cut(s) 746
MseI TTAA 4 cut(s) 257, 461, 726, 782
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 140, 911, 1010
MspR9I CCNGG 1 cut(s) 912
MunI CAATTG 1 cut(s) 791
MwoI GCNNNNNNNGC 9 cut(s) 56, 94, 410, 479, 664, 880, 889, 893, 956
NciI CCSGG 1 cut(s) 912
NcoI CCATGG 1 cut(s) 701
NdeI CATATG 1 cut(s) 621
NdeII GATC 4 cut(s) 148, 437, 929, 1030
NlaIII CATG 6 cut(s) 250, 506, 605, 638, 705, 896
NlaIV GGNNCC 5 cut(s) 205, 279, 333, 909, 931
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 2 cut(s) 380, 615
NspI RCATGY 1 cut(s) 896
PaeI GCATGC 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 953
PdmI GAANNNNTTC 2 cut(s) 108, 231
PfeI GAWTC 2 cut(s) 22, 772
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 6 cut(s) 31, 99, 415, 961, 985, 1078
PleI GAGTC 3 cut(s) 32, 85, 793
PpsI GAGTC 3 cut(s) 32, 85, 793
PpuMI RGGWCCY 1 cut(s) 278
PsiI TTATAA 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 1062
PspN4I GGNNCC 5 cut(s) 205, 279, 333, 909, 931
PspPI GGNCC 3 cut(s) 278, 656, 1049
PspPPI RGGWCCY 1 cut(s) 278
PspXI VCTCGAGB 1 cut(s) 953
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 3 cut(s) 437, 929, 1030
RsaI GTAC 4 cut(s) 205, 333, 409, 854
RsaNI GTAC 4 cut(s) 204, 332, 408, 853
SalI GTCGAC 1 cut(s) 796
SaqAI TTAA 4 cut(s) 257, 461, 726, 782
SatI GCNGC 6 cut(s) 30, 98, 414, 960, 984, 1077
Sau3AI GATC 4 cut(s) 148, 437, 929, 1030
Sau96I GGNCC 3 cut(s) 278, 656, 1049
SchI GAGTC 3 cut(s) 32, 85, 793
ScrFI CCNGG 1 cut(s) 912
SduI GDGCHC 1 cut(s) 52
SfaNI GCATC 2 cut(s) 75, 460
SfcI CTRYAG 1 cut(s) 662
Sfr274I CTCGAG 1 cut(s) 953
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 953
SmlI CTYRAG 2 cut(s) 33, 953
SmoI CTYRAG 2 cut(s) 33, 953
SphI GCATGC 1 cut(s) 896
Sse9I AATT 8 cut(s) 154, 532, 586, 593, 682, 707, 727, 791
SsiI CCGC 4 cut(s) 335, 411, 872, 960
SspMI CTAG 6 cut(s) 300, 405, 483, 678, 923, 1081
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 2 cut(s) 208, 701
TaaI ACNGT 5 cut(s) 512, 550, 675, 852, 1040
TaqI TCGA 5 cut(s) 716, 797, 916, 954, 1035
TaqII GACCGA 1 cut(s) 161
TasI AATT 8 cut(s) 154, 532, 586, 593, 682, 707, 727, 791
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 2 cut(s) 22, 772
Tru1I TTAA 4 cut(s) 257, 461, 726, 782
Tru9I TTAA 4 cut(s) 257, 461, 726, 782
TscAI CASTG 2 cut(s) 774, 1045
TseFI GTSAC 2 cut(s) 380, 615
TseI GCWGC 5 cut(s) 29, 97, 413, 983, 1076
Tsp45I GTSAC 2 cut(s) 380, 615
TspDTI ATGAA 5 cut(s) 101, 590, 623, 744, 813
TspRI CASTG 2 cut(s) 774, 1045
Van91I CCANNNNNTGG 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 154
XceI RCATGY 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 953
XmiI GTMKAC 2 cut(s) 607, 797
XmnI GAANNNNTTC 2 cut(s) 108, 231
XspI CTAG 6 cut(s) 300, 405, 483, 678, 923, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.