RLG00000004493

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006967
Physical Location & Seq
Reverse (-)
59828471 .. 59829234
764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004493

Sequence Viewer

Length: 672 bp
ATGAGCTTCACTCCTGATGAAGTGTCAGGTATGATCGCTTCTTCGACCGCTACTACTTTACCCATATCTAATTCTCCTGCTAATACTCATGTTAATTCTGGAGCTTGTGCTAGTATCCAACGAGGTAAAATGGCTGCTGCTTGTGATAGCACTGTTGTTGTTAGTGATGTTCCTAGTGGTAGTAAGTTGATGAATGATGCCTTTAAAGGCAGAGATAGGTTTGACACCTCTGACTCTGGGAATTGGCAACAACCCCCACACTACTATCAACATACTATTGGTCCTACTTATACTGATTTCAATTTTCCTAATCATGTATCGCATTCATCCAATATTCCTGTTCCAAGCATGGGTTACCAAGGGTACCAATCTCTTAATATGCCTGCTTCTACTATGGGTTATGTAATGGACAATTCTTTTCATGGTGGCTCCACATATCTTGGTCCTTCTAGTGCCTCTTCATATTATCCTCAGTGGCAAGCTAATCCCAGCAGTTCTACTACTCATGCACCAAATGTTAGACCTACTTTACCTTTTGCTGTGAACCAGGCATCATCAGTTTCCATATTATGTGCAACCCCCACCGATGCAGGCATTACCTGGATATTATCCCCAGCAACCATATACTGGAGATCGGGGATATCCTTTGCACCATCAAATGCAATATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

23.68

Weight (kDa)

6.1

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 627
AciI CCGC 1 cut(s) 48
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 350, 627
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 2 cut(s) 546, 599
AluBI AGCT 3 cut(s) 6, 104, 482
AluI AGCT 3 cut(s) 6, 104, 482
ApeKI GCWGC 2 cut(s) 134, 137
Asp718I GGTACC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 281, 443
AvaII GGWCC 2 cut(s) 281, 443
BanI GGYRCC 1 cut(s) 363
BarI GAAGNNNNNNTAC 2 cut(s) 22, 54
BbvI GCAGC 2 cut(s) 121, 124
BccI CCATC 1 cut(s) 661
BciT130I CCWGG 2 cut(s) 548, 601
BciVI GTATCC 1 cut(s) 125
BfaI CTAG 3 cut(s) 111, 174, 450
BfuI GTATCC 1 cut(s) 125
BisI GCNGC 2 cut(s) 135, 138
BlsI GCNGC 2 cut(s) 136, 139
Bme1390I CCNGG 2 cut(s) 548, 601
Bme18I GGWCC 2 cut(s) 281, 443
BmgT120I GGNCC 2 cut(s) 281, 443
BmiI GGNNCC 2 cut(s) 365, 430
BmrFI CCNGG 2 cut(s) 548, 601
BmsI GCATC 3 cut(s) 187, 560, 577
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 120, 649
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 350, 627
Bse1I ACTGG 1 cut(s) 632
BseBI CCWGG 2 cut(s) 548, 601
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 2 cut(s) 350, 627
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 632
BseXI GCAGC 2 cut(s) 121, 124
BseYI CCCAGC 2 cut(s) 488, 613
Bsh1285I CGRYCG 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 350, 627
BsmI GAATGC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 33, 632
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 365, 430
BspT107I GGYRCC 1 cut(s) 363
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 2 cut(s) 33, 632
BssT1I CCWWGG 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 548, 601
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 463
BstC8I GCNNGC 3 cut(s) 384, 480, 592
BstDEI CTNAG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 2 cut(s) 36, 635
BstMBI GATC 2 cut(s) 33, 632
BstMCI CGRYCG 1 cut(s) 48
BstNI CCWGG 2 cut(s) 548, 601
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 546, 599
BstV1I GCAGC 2 cut(s) 121, 124
BsuI GTATCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 326
BtsIMutI CAGTG 2 cut(s) 150, 479
Cac8I GCNNGC 3 cut(s) 384, 480, 592
Cfr13I GGNCC 2 cut(s) 281, 443
Csp6I GTAC 1 cut(s) 364
CspCI CAANNNNNGTGG 2 cut(s) 421, 456
CviAII CATG 5 cut(s) 89, 314, 349, 422, 506
CviJI RGCY 5 cut(s) 6, 104, 134, 429, 482
CviKI_1 RGCY 5 cut(s) 6, 104, 134, 429, 482
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 1 cut(s) 471
DpnI GATC 2 cut(s) 35, 634
DpnII GATC 2 cut(s) 33, 632
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 358
Eco32I GATATC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 281, 443
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 546, 599
EcoRV GATATC 1 cut(s) 642
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 5 cut(s) 92, 317, 352, 425, 509
FatI CATG 5 cut(s) 88, 313, 348, 421, 505
Fnu4HI GCNGC 2 cut(s) 135, 138
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 135, 138
FspBI CTAG 3 cut(s) 111, 174, 450
GluI GCNGC 2 cut(s) 135, 138
GsaI CCCAGC 2 cut(s) 492, 617
GsuI CTGGAG 2 cut(s) 120, 649
Hin1II CATG 5 cut(s) 92, 317, 352, 425, 509
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 14, 99
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 509, 575, 590, 650, 662
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 5 cut(s) 92, 317, 352, 425, 509
KpnI GGTACC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 33, 632
LmnI GCTCC 2 cut(s) 101, 434
Lsp1109I GCAGC 2 cut(s) 121, 124
LweI GCATC 3 cut(s) 187, 560, 577
MaeI CTAG 3 cut(s) 111, 174, 450
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 35, 634
MboI GATC 2 cut(s) 33, 632
MboII GAAGA 2 cut(s) 33, 450
MluCI AATT 5 cut(s) 70, 94, 241, 301, 412
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 4 cut(s) 116, 238, 466, 480
MseI TTAA 3 cut(s) 93, 204, 375
MspR9I CCNGG 2 cut(s) 548, 601
Mva1269I GAATGC 1 cut(s) 322
MvaI CCWGG 2 cut(s) 548, 601
NdeII GATC 2 cut(s) 33, 632
NlaIII CATG 5 cut(s) 92, 317, 352, 425, 509
NlaIV GGNNCC 2 cut(s) 365, 430
PctI GAATGC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 627
PkrI GCNGC 2 cut(s) 136, 139
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 546, 599
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 2 cut(s) 488, 613
PspGI CCWGG 2 cut(s) 546, 599
PspN4I GGNNCC 2 cut(s) 365, 430
PspPI GGNCC 2 cut(s) 281, 443
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SaqAI TTAA 3 cut(s) 93, 204, 375
SatI GCNGC 2 cut(s) 135, 138
Sau3AI GATC 2 cut(s) 33, 632
Sau96I GGNCC 2 cut(s) 281, 443
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 2 cut(s) 548, 601
SfaNI GCATC 3 cut(s) 187, 560, 577
SinI GGWCC 2 cut(s) 281, 443
Sse9I AATT 5 cut(s) 70, 94, 241, 301, 412
SsiI CCGC 1 cut(s) 48
SspI AATATT 1 cut(s) 334
SspMI CTAG 3 cut(s) 111, 174, 450
StyD4I CCNGG 2 cut(s) 546, 599
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 44
TasI AATT 5 cut(s) 70, 94, 241, 301, 412
Tru1I TTAA 3 cut(s) 93, 204, 375
Tru9I TTAA 3 cut(s) 93, 204, 375
TscAI CASTG 2 cut(s) 157, 479
TseI GCWGC 2 cut(s) 134, 137
TspDTI ATGAA 5 cut(s) 33, 206, 315, 410, 450
TspRI CASTG 2 cut(s) 157, 479
Van91I CCANNNNNTGG 1 cut(s) 627
VpaK11BI GGWCC 2 cut(s) 281, 443
XspI CTAG 3 cut(s) 111, 174, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.