Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

41649167 .. 41649996

Gene Structure 830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45668

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAATAGCTTGGAATGCGTGTGGGTCGCCGTCAACATCAGGCTGTTGATTACCTCCGAGCTTTTGGTCGGCTGCACCGATTGCATTTCCGTACTTCCTGCTGAACCTCAGGTGCAAATTGGGACTCATACATTCACCTACGATTATGTGTATGGTAGCTCCGCACTGTCTTCTAGCTCAGTGTATAATGATTGTGTTGCTCCACTAGTGGATGCACTCTTCCATGGATACAATGCTACTGTGCTTGCTTATGGCCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

87

Amino Acids

9.43

Weight (kDa)

4.14

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	37 - 86	2.3e-10	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	253
AfaI	GTAC	1 cut(s)	93
AhlI	ACTAGT	1 cut(s)	205
AluBI	AGCT	4 cut(s)	9, 61, 159, 177
AluI	AGCT	4 cut(s)	9, 61, 159, 177
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	127
AxyI	CCTNAGG	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	2 cut(s)	174, 206
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	122, 192
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	2 cut(s)	121, 191
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	168, 241
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	108, 178
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 81
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	2 cut(s)	164, 186
Cac8I	GCNNGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	7 cut(s)	9, 43, 61, 72, 159, 177, 255
CviKI_1	RGCY	7 cut(s)	9, 43, 61, 72, 159, 177, 255
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	108, 178
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	223
Eco81I	CCTNAGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	227
FaiI	YATR	6 cut(s)	129, 147, 153, 186, 225, 252
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	2 cut(s)	174, 206
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	168, 241
HpyCH4V	TGCA	4 cut(s)	75, 84, 115, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 81
HpyF3I	CTNAG	2 cut(s)	108, 178
Hsp92II	CATG	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	164, 205
LpnPI	CCDG	3 cut(s)	25, 95, 111
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	174, 206
MboII	GAAGA	2 cut(s)	162, 211
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	2 cut(s)	64, 117
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	15, 81
NcoI	CCATGG	1 cut(s)	223
NlaIII	CATG	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SatI	GCNGC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	118
SetI	ASST	8 cut(s)	11, 56, 63, 109, 114, 140, 161, 179
SfaNI	GCATC	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	1 cut(s)	162
SspMI	CTAG	2 cut(s)	174, 206
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	168, 241
TasI	AATT	1 cut(s)	117
TscAI	CASTG	2 cut(s)	171, 186
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	171, 186
XspI	CTAG	2 cut(s)	174, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.