Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

62183073 .. 62215701

Gene Structure 32629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGCAAAAGAAGATTTCTCACTGTCTGAATGGAGCAAATAATGATGATATCGGTGATGACATACATTTAGTTGACCTAGCAGGTTCTGAGCGGGCAAAACGAACAGGTGCAGATGGCATGCGCTTGAAAGAAGGCATTCATATCAACAAGGGTTTACTTGCTCTCGGAAATGTGATTAGTGCCCTGGGAGATGAGAAAAAGAGGATAGAAGGCGGACATGTTCCCTACTGTGATAGCAAGTTAACTCGCTTGTTACAGGATTCACTAGGAGGAAACAGTAAGACTGTGATGATTGCTTGTGTTAGTCCAGCTGACACAAATGCAGAAGAGACCTTGAATACTTTAAAATATGCTAACCGTTCTCGCAAAATCCAGTACAAGGCAGTGAAAGAGGGAAGGAGGAACGAGTATGAGATGCATAAGCTGTTAGCTTTAAACCAGAGGCAAAAAATGGTTTTGCAACGAAAGACAGAAGAAGCTAATATGGCCACAAAAAAGCTAAAGGAGCTTTTAGAATCCAGAAAGACTTCTTCACGTGAAACTTCTGGTCATAATGCTCATGGTATTCAGGCTCTGATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACTCATGAAGTAAGATCTGAGTATGAGTGGCAAATTGAAGAGCGTGCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCGGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGAAGCAGAAGAGCGCGAGCGGGGTTTCAATGGCAGGGGGCGTTGGAATCAAGTTCGGTCTCTTACAGATGCCAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

294

Amino Acids

32.73

Weight (kDa)

9.18

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	21 - 125	4.7e-43	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccBSI	CCGCTC	2 cut(s)	94, 822
AccII	CGCG	1 cut(s)	818
AciI	CCGC	3 cut(s)	94, 216, 822
AcoI	YGGCCR	2 cut(s)	489, 672
AcsI	RAATTY	2 cut(s)	751, 878
AcvI	CACGTG	1 cut(s)	539
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	7 cut(s)	130, 340, 605, 656, 756, 773, 831
AjnI	CCWGG	2 cut(s)	186, 739
AluBI	AGCT	8 cut(s)	314, 427, 434, 482, 502, 511, 601, 691
AluI	AGCT	8 cut(s)	314, 427, 434, 482, 502, 511, 601, 691
Alw26I	GTCTC	3 cut(s)	326, 741, 866
AlwNI	CAGNNNCTG	2 cut(s)	89, 577
AoxI	GGCC	2 cut(s)	489, 672
ApoI	RAATTY	2 cut(s)	751, 878
Asp700I	GAANNNNTTC	2 cut(s)	138, 529
AspLEI	GCGC	2 cut(s)	126, 818
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	187
BalI	TGGCCA	2 cut(s)	491, 674
BbrPI	CACGTG	1 cut(s)	539
BccI	CCATC	2 cut(s)	110, 664
BciT130I	CCWGG	2 cut(s)	188, 741
BcoDI	GTCTC	3 cut(s)	326, 741, 866
BfaI	CTAG	3 cut(s)	80, 269, 795
BfuAI	ACCTGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	632
Bme1390I	CCNGG	2 cut(s)	188, 741
BmrFI	CCNGG	2 cut(s)	188, 741
BmsI	GCATC	3 cut(s)	408, 570, 861
BpuEI	CTTGAG	1 cut(s)	617
BsaAI	YACGTR	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	326, 866
BsaJI	CCNNGG	4 cut(s)	186, 187, 675, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	188, 741
BseDI	CCNNGG	4 cut(s)	186, 187, 675, 723
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	81, 627
BseNI	ACTGG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	818
BshFI	GGCC	2 cut(s)	491, 674
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	3 cut(s)	326, 741, 866
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	491, 674
Bso31I	GGTCTC	2 cut(s)	326, 866
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	1 cut(s)	632
BspACI	CCGC	3 cut(s)	94, 216, 822
BspANI	GGCC	2 cut(s)	491, 674
BspCNI	CTCAG	2 cut(s)	82, 628
BspFNI	CGCG	1 cut(s)	818
BspHI	TCATGA	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	74
BspQI	GCTCTTC	2 cut(s)	651, 806
BspTNI	GGTCTC	2 cut(s)	326, 866
BsrBI	CCGCTC	2 cut(s)	94, 822
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	4 cut(s)	186, 187, 675, 723
BssMI	GATC	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	188, 741
Bst4CI	ACNGT	6 cut(s)	26, 233, 281, 289, 362, 613
Bst6I	CTCTTC	3 cut(s)	324, 651, 806
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	6 cut(s)	96, 122, 585, 663, 783, 820
BstDEI	CTNAG	2 cut(s)	90, 636
BstFNI	CGCG	1 cut(s)	818
BstHHI	GCGC	2 cut(s)	126, 818
BstKTI	GATC	1 cut(s)	635
BstMAI	GTCTC	3 cut(s)	326, 741, 866
BstMBI	GATC	1 cut(s)	632
BstMWI	GCNNNNNNNGC	3 cut(s)	488, 508, 671
BstNI	CCWGG	2 cut(s)	188, 741
BstNSI	RCATGY	3 cut(s)	124, 224, 781
BstSCI	CCNGG	2 cut(s)	186, 739
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	818
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	491, 674
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	22, 393
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	6 cut(s)	96, 122, 585, 663, 783, 820
CaiI	CAGNNNCTG	2 cut(s)	89, 577
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	2 cut(s)	126, 818
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	6 cut(s)	121, 221, 563, 623, 778, 802
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	90, 636
DpnI	GATC	1 cut(s)	634
DpnII	GATC	1 cut(s)	632
DraI	TTTAAA	2 cut(s)	348, 438
EaeI	YGGCCR	2 cut(s)	489, 672
Eam1104I	CTCTTC	3 cut(s)	324, 651, 806
EarI	CTCTTC	3 cut(s)	324, 651, 806
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	675
Eco31I	GGTCTC	2 cut(s)	326, 866
Eco32I	GATATC	1 cut(s)	52
Eco72I	CACGTG	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	186, 739
EcoRV	GATATC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	6 cut(s)	124, 224, 566, 626, 781, 805
FatI	CATG	6 cut(s)	120, 220, 562, 622, 777, 801
FauI	CCCGC	2 cut(s)	87, 815
FspBI	CTAG	3 cut(s)	80, 269, 795
GlaI	GCGC	2 cut(s)	125, 817
HaeIII	GGCC	2 cut(s)	491, 674
HhaI	GCGC	2 cut(s)	126, 818
Hin1II	CATG	6 cut(s)	124, 224, 566, 626, 781, 805
Hin6I	GCGC	2 cut(s)	124, 816
HinP1I	GCGC	2 cut(s)	124, 816
HincII	GTYRAC	2 cut(s)	76, 246
HindII	GTYRAC	2 cut(s)	76, 246
HinfI	GANTC	5 cut(s)	263, 518, 619, 719, 849
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	76, 158, 246
Hpy188I	TCNGA	6 cut(s)	30, 91, 170, 579, 637, 727
Hpy188III	TCNNGA	2 cut(s)	522, 623
Hpy8I	GTNNAC	3 cut(s)	76, 158, 246
HpyAV	CCTTC	3 cut(s)	128, 206, 393
HpyCH4III	ACNGT	6 cut(s)	26, 233, 281, 289, 362, 613
HpyCH4IV	ACGT	2 cut(s)	538, 706
HpyCH4V	TGCA	7 cut(s)	113, 326, 421, 463, 583, 746, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	488, 508, 671
HpyF3I	CTNAG	2 cut(s)	90, 636
HpySE526I	ACGT	2 cut(s)	538, 706
Hsp92II	CATG	6 cut(s)	124, 224, 566, 626, 781, 805
HspAI	GCGC	2 cut(s)	124, 816
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	632
LguI	GCTCTTC	2 cut(s)	651, 806
LmnI	GCTCC	3 cut(s)	4, 35, 508
LweI	GCATC	3 cut(s)	408, 570, 861
MaeI	CTAG	3 cut(s)	80, 269, 795
MaeII	ACGT	2 cut(s)	538, 706
MaeIII	GTNAC	2 cut(s)	255, 607
MalI	GATC	1 cut(s)	634
MbiI	CCGCTC	2 cut(s)	94, 822
MboI	GATC	1 cut(s)	632
MboII	GAAGA	8 cut(s)	25, 341, 488, 525, 668, 710, 783, 823
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	187
MlsI	TGGCCA	2 cut(s)	491, 674
MluCI	AATT	4 cut(s)	651, 709, 751, 878
MluNI	TGGCCA	2 cut(s)	491, 674
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	826
MnlI	CCTC	6 cut(s)	198, 266, 388, 396, 438, 733
Mox20I	TGGCCA	2 cut(s)	491, 674
Mph1103I	ATGCAT	1 cut(s)	423
MroXI	GAANNNNTTC	2 cut(s)	138, 529
MscI	TGGCCA	2 cut(s)	491, 674
MseI	TTAA	5 cut(s)	245, 347, 437, 615, 713
Msp20I	TGGCCA	2 cut(s)	491, 674
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	2 cut(s)	188, 741
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	188, 741
MvnI	CGCG	1 cut(s)	818
MwoI	GCNNNNNNNGC	3 cut(s)	488, 508, 671
NdeII	GATC	1 cut(s)	632
NlaIII	CATG	6 cut(s)	124, 224, 566, 626, 781, 805
NmuCI	GTSAC	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	3 cut(s)	124, 224, 781
PaeI	GCATGC	1 cut(s)	124
PagI	TCATGA	1 cut(s)	622
PasI	CCCWGGG	1 cut(s)	187
PciI	ACATGT	1 cut(s)	220
PciSI	GCTCTTC	2 cut(s)	651, 806
PctI	GAATGC	1 cut(s)	138
PdmI	GAANNNNTTC	2 cut(s)	138, 529
PfeI	GAWTC	4 cut(s)	263, 518, 719, 849
PleI	GAGTC	1 cut(s)	613
PmaCI	CACGTG	1 cut(s)	539
PmlI	CACGTG	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	613
Ppu21I	YACGTR	1 cut(s)	539
PscI	ACATGT	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	186, 739
PspCI	CACGTG	1 cut(s)	539
PspGI	CCWGG	2 cut(s)	186, 739
PstNI	CAGNNNCTG	2 cut(s)	89, 577
PsuI	RGATCY	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SapI	GCTCTTC	2 cut(s)	651, 806
SaqAI	TTAA	5 cut(s)	245, 347, 437, 615, 713
Sau3AI	GATC	1 cut(s)	632
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	2 cut(s)	188, 741
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	3 cut(s)	408, 570, 861
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	4 cut(s)	651, 709, 751, 878
SsiI	CCGC	3 cut(s)	94, 216, 822
SspMI	CTAG	3 cut(s)	80, 269, 795
StyD4I	CCNGG	2 cut(s)	186, 739
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	6 cut(s)	26, 233, 281, 289, 362, 613
TaiI	ACGT	2 cut(s)	541, 709
TaqI	TCGA	1 cut(s)	591
TaqII	GACCGA	1 cut(s)	848
TasI	AATT	4 cut(s)	651, 709, 751, 878
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	4 cut(s)	263, 518, 719, 849
Tru1I	TTAA	5 cut(s)	245, 347, 437, 615, 713
Tru9I	TTAA	5 cut(s)	245, 347, 437, 615, 713
TscAI	CASTG	2 cut(s)	29, 393
TseFI	GTSAC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	131, 639, 818
TspRI	CASTG	2 cut(s)	29, 393
XapI	RAATTY	2 cut(s)	751, 878
XceI	RCATGY	3 cut(s)	124, 224, 781
XmnI	GAANNNNTTC	2 cut(s)	138, 529
XspI	CTAG	3 cut(s)	80, 269, 795
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.