Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

62633457 .. 62637315

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG440900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGACAAACGAACTAATGGACCTCATGGGTGATGTCTCAGGATTGGAAGTGAAATCCCGGGACATTGGATCAACCATTTCAACTCCATCGAAAAGGAAGAGTAAGAAAAAGTCTGAATTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGGGGGTTTCAATGGCAGGGGGCATTGGAATCAAGTGCCTGTTACGAGATAAAGAAGTTGCATACAGAGAGAAGGATTTGGAAATAAGAGATTTGAAGGAAAAAGTTGTAAGCCTCAGTAGTTCGCTCAGGAAGTTGGAGAATAAGAATGCTGAACTTATGCATCAGAACTCAGCGTTGAAGAAATCTGAAAATGGACACAAGTATGATTTGCGCAAGCTAGTCAATTTGACCCTCCTTGCTCTGCTCTCTCTGTGTGAGTTTGGTCCAATCAAGTATCCGGTTCGACCTTACAGGATCAAGAATTTGGGGATGAACTTAATCGAGCAACTGGATAGTGTAGATGTGGGAGAACCACTTAACGATAATGCAGCGGAGGGAGATCAACATCAGAACTTACATCAAGATTTGAAATTGAGGGAGACAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

6.92

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	371
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	2 cut(s)	76, 461
AcsI	RAATTY	1 cut(s)	460
AgsI	TTSAA	5 cut(s)	81, 168, 253, 337, 568
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	40, 572
AlwI	GGATC	2 cut(s)	76, 461
Ama87I	CYCGRG	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	2 cut(s)	156, 372
AspS9I	GGNCC	2 cut(s)	19, 422
AsuC2I	CCSGG	2 cut(s)	58, 59
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	2 cut(s)	19, 422
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	2 cut(s)	58, 59
BcoDI	GTCTC	2 cut(s)	40, 572
BfaI	CTAG	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	58, 59
Bme18I	GGWCC	2 cut(s)	19, 422
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	19, 422
BmrFI	CCNGG	2 cut(s)	58, 59
BmsI	GCATC	2 cut(s)	137, 328
Bpu10I	CCTNAGC	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	58, 59
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	1 cut(s)	569
Bse1I	ACTGG	1 cut(s)	492
Bse8I	GATNNNNATC	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	474
BseJI	GATNNNNATC	1 cut(s)	543
BseMII	CTCAG	4 cut(s)	51, 286, 298, 342
BseNI	ACTGG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	539
Bsh1236I	CGCG	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	58, 437
BslFI	GGGAC	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	40, 572
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	68, 453, 538
BspACI	CCGC	1 cut(s)	530
BspCNI	CTCAG	4 cut(s)	50, 285, 297, 341
BspFNI	CGCG	1 cut(s)	156
BspPI	GGATC	2 cut(s)	76, 461
BspQI	GCTCTTC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	68, 453, 538
Bst6I	CTCTTC	2 cut(s)	92, 144
BstC8I	GCNNGC	1 cut(s)	374
BstDEI	CTNAG	4 cut(s)	37, 272, 284, 328
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	2 cut(s)	156, 372
BstKTI	GATC	3 cut(s)	71, 456, 541
BstMAI	GTCTC	2 cut(s)	40, 572
BstMBI	GATC	3 cut(s)	68, 453, 538
BstSCI	CCNGG	2 cut(s)	56, 57
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	374
CfoI	GCGC	2 cut(s)	156, 372
Cfr13I	GGNCC	2 cut(s)	19, 422
Cfr9I	CCCGGG	1 cut(s)	57
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	2 cut(s)	270, 376
CviKI_1	RGCY	2 cut(s)	270, 376
DdeI	CTNAG	4 cut(s)	37, 272, 284, 328
DpnI	GATC	3 cut(s)	70, 455, 540
DpnII	GATC	3 cut(s)	68, 453, 538
Eam1104I	CTCTTC	2 cut(s)	92, 144
EarI	CTCTTC	2 cut(s)	92, 144
Eco47I	GGWCC	2 cut(s)	19, 422
Eco88I	CYCGRG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	321
FaeI	CATG	1 cut(s)	28
FaiI	YATR	5 cut(s)	26, 125, 220, 317, 363
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	377
FspI	TGCGCA	1 cut(s)	371
GlaI	GCGC	2 cut(s)	155, 371
GluI	GCNGC	1 cut(s)	528
HapII	CCGG	2 cut(s)	58, 437
HhaI	GCGC	2 cut(s)	156, 372
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	154, 370
HinP1I	GCGC	2 cut(s)	154, 370
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	2 cut(s)	58, 437
HphI	GGTGA	1 cut(s)	41
Hpy188I	TCNGA	5 cut(s)	115, 142, 324, 346, 549
Hpy188III	TCNNGA	4 cut(s)	39, 286, 457, 560
HpyAV	CCTTC	2 cut(s)	223, 247
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	3 cut(s)	218, 319, 527
HpyF3I	CTNAG	4 cut(s)	37, 272, 284, 328
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	154, 370
Kzo9I	GATC	3 cut(s)	68, 453, 538
LguI	GCTCTTC	1 cut(s)	144
LpnPI	CCDG	8 cut(s)	24, 71, 159, 209, 271, 436, 450, 473
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	2 cut(s)	137, 328
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	3 cut(s)	70, 455, 540
MboI	GATC	3 cut(s)	68, 453, 538
MboII	GAAGA	3 cut(s)	109, 161, 349
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	5 cut(s)	116, 134, 382, 460, 569
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	32, 151, 281, 401, 526, 567
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	2 cut(s)	476, 516
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	58, 437
MspR9I	CCNGG	2 cut(s)	58, 59
MunI	CAATTG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	310
MvnI	CGCG	1 cut(s)	156
NciI	CCSGG	2 cut(s)	58, 59
NdeII	GATC	3 cut(s)	68, 453, 538
NlaIII	CATG	1 cut(s)	28
NsbI	TGCGCA	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	144
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	529
PspPI	GGNCC	2 cut(s)	19, 422
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	476, 516
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	3 cut(s)	68, 453, 538
Sau96I	GGNCC	2 cut(s)	19, 422
ScrFI	CCNGG	2 cut(s)	58, 59
SetI	ASST	4 cut(s)	24, 378, 448, 587
SfaNI	GCATC	2 cut(s)	137, 328
SinI	GGWCC	2 cut(s)	19, 422
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	116, 134, 382, 460, 569
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	56, 57
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	3 cut(s)	89, 442, 480
TasI	AATT	5 cut(s)	116, 134, 382, 460, 569
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	476, 516
Tru9I	TTAA	2 cut(s)	476, 516
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	485
TspMI	CCCGGG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	19, 422
XapI	RAATTY	1 cut(s)	460
XmaI	CCCGGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.