Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Forward (+)

49608873 .. 49610384

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGACACCTTTCAAGGTGCAAATTGGGACTCATACATTCACCTATGATTATGTGTATGGTAGCACAGCACTGCCTTCTAGCTCAGTGTATGGTGATTGTGTTGCTCCACTGGTGGATGCACTCTTCCATGGATACAATGCTACTGTGCTTGCTTACGGCCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

55

Amino Acids

5.94

Weight (kDa)

5.13

Isoelectric Point (pI)

13.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	8 - 54	5.8e-10	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
AoxI	GGCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	31, 104
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	3 cut(s)	68, 90, 107
Cac8I	GCNNGC	1 cut(s)	150
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	2 cut(s)	81, 159
CviKI_1	RGCY	2 cut(s)	81, 159
DdeI	CTNAG	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	131
FaiI	YATR	6 cut(s)	33, 45, 51, 57, 90, 129
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	1 cut(s)	127
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	28
HphI	GGTGA	2 cut(s)	31, 104
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	19, 119
HpyF3I	CTNAG	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	2 cut(s)	95, 146
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	78
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	127
NlaIII	CATG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	5 cut(s)	10, 18, 44, 83, 165
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	5 cut(s)	25, 90, 122, 140, 161
Sse9I	AATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	145
TasI	AATT	1 cut(s)	21
TscAI	CASTG	3 cut(s)	75, 90, 114
TspRI	CASTG	3 cut(s)	75, 90, 114
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.