Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002536.1

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

51649 .. 53833

Gene Structure 2185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002536.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgatggccaaggaaagaaccaagctaatagaagaacaacgtaatttaagtgattcctcggaaataatgtctcctggtgcaagaaattcaaggatttttgcacttgaaaacatgcttgctacttcttctagcaccatggtatctatggcatcacaattgtcagaagcagaagagcgcgagcggggtttcaatggcagggggcgttggaatcaagttcggtctcttacagatgccaaaattttgatgaatcatctgttcaacttagcttcttcctccaggtgcctgttacgagataaagaagttgcatacagagagaaggatttggaaataagagatttgaaggaaaaagtagtaagcctcagtagttcgctcaggaagctggagaataagaatgctgaacttatgcatcagaactcagcgttgaagaaatctgaaaatggacacaagtatgatttgcgcaagctagattcacggacatcattcatcttggaggacatggatatatctgattcagatgatgagtggatagcctcaggaaagccaaagactaaaaagagaaagtccaaatatggaggttcaagtgagggattcaatgcgcaaagtgctaatgattctggaggcttcaagttagatagtgctggtgaggggatagtcagtgttgtgaagaaaagcgagtcgggagtatgctgctcttgtagcaagacttcctcctgcaaaacaactaaatgtcaatgtcgaactactggaggagcctgtgggccatcctgtggttgtgtgcctgctaagtgttcaaatagagattccagcctagttgaggtacatgggtctccagaaggagaaactgctcaaggaattggaaatgatgaaggcactgatgaaacagagaagaatcagcatcttgcttctcagggtgccaggttacttcagaatgcattagttgagaggtctagtgaaacaactgatgatggtgtaacaagaaggaaagctctttcagagattggaaatacgttggccaaatccaatgcgccgaagcctaaccagagaaagaaatggcgaagaaccacaatccaactggttacaaatgctccgcctccctcgcagccagcaactgctgaagcacctcaaagggcagataaaggggcaccagaggtacccatccctatgaagcttcctcaaggggcagataaaggggcaccagaggcacccatccctatgaagcttcctagggcaatgcgatcagctccatcaaatggtggcaacttatttagagaaaggaattctgataaagcagatcaatctggtgtcaataaggaggccggtgttcctgctccaagaagtcctctgcggcagaacaaaacatcagatgagaaggagaactgtggcctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

462

Amino Acids

50.18

Weight (kDa)

9.07

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	458, 597
Acc65I	GGTACC	1 cut(s)	1150
AccB1I	GGYRCC	6 cut(s)	279, 911, 1141, 1150, 1192, 1201
AccB7I	CCANNNNNTGG	2 cut(s)	767, 1250
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	181, 1088, 1345
AcoI	YGGCCR	2 cut(s)	6, 1011
AcsI	RAATTY	3 cut(s)	85, 237, 1276
AcuI	CTGAAG	2 cut(s)	908, 1134
AfaI	GTAC	2 cut(s)	819, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	767, 814, 1250
AjnI	CCWGG	3 cut(s)	73, 275, 914
AluBI	AGCT	8 cut(s)	25, 266, 379, 463, 986, 1168, 1219, 1241
AluI	AGCT	8 cut(s)	25, 266, 379, 463, 986, 1168, 1219, 1241
Alw26I	GTCTC	3 cut(s)	75, 225, 831
AlwNI	CAGNNNCTG	1 cut(s)	1109
AoxI	GGCC	5 cut(s)	6, 758, 1011, 1314, 1381
ApeKI	GCWGC	2 cut(s)	687, 1099
ApoI	RAATTY	3 cut(s)	85, 237, 1276
Asp718I	GGTACC	1 cut(s)	1150
AspA2I	CCTAGG	1 cut(s)	1223
AspLEI	GCGC	4 cut(s)	177, 459, 598, 1027
AspS9I	GGNCC	1 cut(s)	758
AsuHPI	GGTGA	1 cut(s)	653
AvrII	CCTAGG	1 cut(s)	1223
AxyI	CCTNAGG	1 cut(s)	532
BaeGI	GKGCMC	2 cut(s)	1144, 1195
BaeI	ACNNNNGTAYC	4 cut(s)	123, 156, 809, 842
BalI	TGGCCA	2 cut(s)	8, 1013
BanI	GGYRCC	6 cut(s)	279, 911, 1141, 1150, 1192, 1201
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
BbvI	GCAGC	2 cut(s)	674, 1111
BccI	CCATC	5 cut(s)	769, 959, 1163, 1214, 1252
BciT130I	CCWGG	3 cut(s)	75, 277, 916
BcoDI	GTCTC	3 cut(s)	75, 225, 831
BfaI	CTAG	5 cut(s)	129, 464, 809, 948, 1224
BisI	GCNGC	3 cut(s)	688, 1100, 1346
BlnI	CCTAGG	1 cut(s)	1223
BlsI	GCNGC	3 cut(s)	689, 1101, 1347
Bme1390I	CCNGG	3 cut(s)	75, 277, 916
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	7 cut(s)	281, 751, 913, 1143, 1152, 1194, 1203
BmrFI	CCNGG	3 cut(s)	75, 277, 916
BmsI	GCATC	4 cut(s)	158, 220, 415, 904
BpmI	CTGGAG	5 cut(s)	259, 401, 636, 765, 813
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	831, 1158
BsaI	GGTCTC	2 cut(s)	225, 831
BsaJI	CCNNGG	4 cut(s)	9, 57, 135, 1223
BsaXI	ACNNNNNCTCC	2 cut(s)	1069, 1099
Bsc4I	CCNNNNNNNGG	3 cut(s)	767, 814, 1250
Bse118I	RCCGGY	1 cut(s)	1316
Bse1I	ACTGG	2 cut(s)	748, 1077
Bse21I	CCTNAGG	1 cut(s)	532
Bse3DI	GCAATG	1 cut(s)	1236
BseBI	CCWGG	3 cut(s)	75, 277, 916
BseDI	CCNNGG	4 cut(s)	9, 57, 135, 1223
BseGI	GGATG	3 cut(s)	761, 1155, 1206
BseLI	CCNNNNNNNGG	3 cut(s)	767, 814, 1250
BseMI	GCAATG	1 cut(s)	1236
BseMII	CTCAG	5 cut(s)	373, 385, 429, 546, 920
BseNI	ACTGG	2 cut(s)	748, 1077
BseRI	GAGGAG	1 cut(s)	762
BseSI	GKGCMC	2 cut(s)	1144, 1195
BseXI	GCAGC	2 cut(s)	674, 1111
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	8, 760, 1013, 1316, 1383
BshNI	GGYRCC	6 cut(s)	279, 911, 1141, 1150, 1192, 1201
BsiSI	CCGG	1 cut(s)	1317
BslI	CCNNNNNNNGG	3 cut(s)	767, 814, 1250
BsmAI	GTCTC	3 cut(s)	75, 225, 831
BsmI	GAATGC	2 cut(s)	397, 934
BsnI	GGCC	5 cut(s)	8, 760, 1013, 1316, 1383
Bso31I	GGTCTC	2 cut(s)	225, 831
Bsp1286I	GDGCHC	2 cut(s)	1144, 1195
Bsp143I	GATC	2 cut(s)	1235, 1291
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	3 cut(s)	181, 1088, 1345
BspANI	GGCC	5 cut(s)	8, 760, 1013, 1316, 1383
BspCNI	CTCAG	5 cut(s)	372, 384, 428, 545, 919
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	7 cut(s)	281, 751, 913, 1143, 1152, 1194, 1203
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	6 cut(s)	279, 911, 1141, 1150, 1192, 1201
BspTNI	GGTCTC	2 cut(s)	225, 831
BsrBI	CCGCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	1236
BsrFI	RCCGGY	1 cut(s)	1316
BsrI	ACTGG	2 cut(s)	748, 1077
BssAI	RCCGGY	1 cut(s)	1316
BssECI	CCNNGG	4 cut(s)	9, 57, 135, 1223
BssMI	GATC	2 cut(s)	1235, 1291
BssT1I	CCWWGG	3 cut(s)	9, 135, 1223
Bst2UI	CCWGG	3 cut(s)	75, 277, 916
Bst4CI	ACNGT	1 cut(s)	1379
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	5 cut(s)	117, 179, 461, 780, 1104
BstDEI	CTNAG	7 cut(s)	262, 359, 371, 415, 532, 783, 906
BstDSI	CCRYGG	1 cut(s)	135
BstENI	CCTNNNNNAGG	1 cut(s)	812
BstF5I	GGATG	3 cut(s)	761, 1155, 1206
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	177, 459, 598, 1027
BstKTI	GATC	2 cut(s)	1238, 1294
BstMAI	GTCTC	3 cut(s)	75, 225, 831
BstMBI	GATC	2 cut(s)	1235, 1291
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 602, 696, 1096, 1199
BstNI	CCWGG	3 cut(s)	75, 277, 916
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	3 cut(s)	73, 275, 914
BstSLI	GKGCMC	2 cut(s)	1144, 1195
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	674, 1111
Bsu36I	CCTNAGG	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	8, 760, 1013, 1316, 1383
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	761, 1155, 1206
BtsIMutI	CAGTG	2 cut(s)	661, 870
Cac8I	GCNNGC	5 cut(s)	117, 179, 461, 780, 1104
CaiI	CAGNNNCTG	1 cut(s)	1109
CfoI	GCGC	4 cut(s)	177, 459, 598, 1027
Cfr10I	RCCGGY	1 cut(s)	1316
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	818, 1151
CviAII	CATG	4 cut(s)	112, 136, 496, 821
CviQI	GTAC	2 cut(s)	818, 1151
DdeI	CTNAG	7 cut(s)	262, 359, 371, 415, 532, 783, 906
DpnI	GATC	2 cut(s)	1237, 1293
DpnII	GATC	2 cut(s)	1235, 1291
EaeI	YGGCCR	2 cut(s)	6, 1011
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	1077
Eco130I	CCWWGG	3 cut(s)	9, 135, 1223
Eco31I	GGTCTC	2 cut(s)	225, 831
Eco57I	CTGAAG	2 cut(s)	908, 1134
Eco81I	CCTNAGG	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	812
EcoRI	GAATTC	1 cut(s)	1276
EcoRII	CCWGG	3 cut(s)	73, 275, 914
EcoT14I	CCWWGG	3 cut(s)	9, 135, 1223
EcoT22I	ATGCAT	2 cut(s)	408, 934
ErhI	CCWWGG	3 cut(s)	9, 135, 1223
FaeI	CATG	4 cut(s)	115, 139, 499, 824
FatI	CATG	4 cut(s)	111, 135, 495, 820
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	688, 1100, 1346
FokI	GGATG	3 cut(s)	748, 1142, 1193
Fsp4HI	GCNGC	3 cut(s)	688, 1100, 1346
FspBI	CTAG	5 cut(s)	129, 464, 809, 948, 1224
FspI	TGCGCA	2 cut(s)	458, 597
GlaI	GCGC	4 cut(s)	176, 458, 597, 1026
GluI	GCNGC	3 cut(s)	688, 1100, 1346
GsuI	CTGGAG	5 cut(s)	259, 401, 636, 765, 813
HaeIII	GGCC	5 cut(s)	8, 760, 1013, 1316, 1383
HapII	CCGG	1 cut(s)	1317
HhaI	GCGC	4 cut(s)	177, 459, 598, 1027
Hin1II	CATG	4 cut(s)	115, 139, 499, 824
Hin6I	GCGC	4 cut(s)	175, 457, 596, 1025
HinP1I	GCGC	4 cut(s)	175, 457, 596, 1025
HindIII	AAGCTT	2 cut(s)	1166, 1217
HpaII	CCGG	1 cut(s)	1317
HphI	GGTGA	1 cut(s)	653
Hpy188III	TCNNGA	5 cut(s)	373, 534, 615, 678, 830
HpyAV	CCTTC	6 cut(s)	310, 334, 827, 860, 972, 1363
HpyCH4III	ACNGT	1 cut(s)	1379
HpyCH4IV	ACGT	2 cut(s)	40, 1007
HpyCH4V	TGCA	6 cut(s)	80, 101, 305, 406, 714, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 602, 696, 1096, 1199
HpyF3I	CTNAG	7 cut(s)	262, 359, 371, 415, 532, 783, 906
HpySE526I	ACGT	2 cut(s)	40, 1007
Hsp92II	CATG	4 cut(s)	115, 139, 499, 824
HspAI	GCGC	4 cut(s)	175, 457, 596, 1025
KpnI	GGTACC	1 cut(s)	1154
Kzo9I	GATC	2 cut(s)	1235, 1291
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	4 cut(s)	749, 1090, 1246, 1333
Lsp1109I	GCAGC	2 cut(s)	674, 1111
LweI	GCATC	4 cut(s)	158, 220, 415, 904
MaeI	CTAG	5 cut(s)	129, 464, 809, 948, 1224
MaeII	ACGT	2 cut(s)	40, 1007
MaeIII	GTNAC	4 cut(s)	285, 918, 970, 1075
MalI	GATC	2 cut(s)	1237, 1293
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	2 cut(s)	1235, 1291
MboII	GAAGA	8 cut(s)	44, 117, 182, 261, 436, 676, 898, 1068
MfeI	CAATTG	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	1144, 1195
MlsI	TGGCCA	2 cut(s)	8, 1013
MluCI	AATT	6 cut(s)	43, 85, 155, 237, 852, 1276
MluNI	TGGCCA	2 cut(s)	8, 1013
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	2 cut(s)	185, 1093
Mox20I	TGGCCA	2 cut(s)	8, 1013
Mph1103I	ATGCAT	2 cut(s)	408, 934
MscI	TGGCCA	2 cut(s)	8, 1013
MseI	TTAA	2 cut(s)	47, 1387
MslI	CAYNNNNRTG	3 cut(s)	447, 1160, 1211
Msp20I	TGGCCA	2 cut(s)	8, 1013
MspI	CCGG	1 cut(s)	1317
MspR9I	CCNGG	3 cut(s)	75, 277, 916
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	2 cut(s)	397, 934
MvaI	CCWGG	3 cut(s)	75, 277, 916
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	5 cut(s)	376, 602, 696, 1096, 1199
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	1235, 1291
NlaIII	CATG	4 cut(s)	115, 139, 499, 824
NlaIV	GGNNCC	7 cut(s)	281, 751, 913, 1143, 1152, 1194, 1203
NsbI	TGCGCA	2 cut(s)	458, 597
NsiI	ATGCAT	2 cut(s)	408, 934
NspI	RCATGY	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	165
PctI	GAATGC	2 cut(s)	397, 934
PfeI	GAWTC	9 cut(s)	53, 208, 247, 467, 509, 588, 611, 800, 889
PflMI	CCANNNNNTGG	2 cut(s)	767, 1250
PkrI	GCNGC	3 cut(s)	689, 1101, 1347
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
Psp6I	CCWGG	3 cut(s)	73, 275, 914
PspGI	CCWGG	3 cut(s)	73, 275, 914
PspN4I	GGNNCC	7 cut(s)	281, 751, 913, 1143, 1152, 1194, 1203
PspPI	GGNCC	1 cut(s)	758
PstNI	CAGNNNCTG	1 cut(s)	1109
RsaI	GTAC	2 cut(s)	819, 1152
RsaNI	GTAC	2 cut(s)	818, 1151
RseI	CAYNNNNRTG	3 cut(s)	447, 1160, 1211
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	47, 1387
SatI	GCNGC	3 cut(s)	688, 1100, 1346
Sau3AI	GATC	2 cut(s)	1235, 1291
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	3 cut(s)	75, 277, 916
SduI	GDGCHC	2 cut(s)	1144, 1195
SfaNI	GCATC	4 cut(s)	158, 220, 415, 904
SmiMI	CAYNNNNRTG	3 cut(s)	447, 1160, 1211
SmlI	CTYRAG	2 cut(s)	846, 1173
SmoI	CTYRAG	2 cut(s)	846, 1173
Sse9I	AATT	6 cut(s)	43, 85, 155, 237, 852, 1276
SsiI	CCGC	3 cut(s)	181, 1088, 1345
SspMI	CTAG	5 cut(s)	129, 464, 809, 948, 1224
StyD4I	CCNGG	3 cut(s)	73, 275, 914
StyI	CCWWGG	3 cut(s)	9, 135, 1223
TaaI	ACNGT	1 cut(s)	1379
TaiI	ACGT	2 cut(s)	43, 1010
TaqI	TCGA	1 cut(s)	736
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	6 cut(s)	43, 85, 155, 237, 852, 1276
TauI	GCSGC	1 cut(s)	1348
TfiI	GAWTC	9 cut(s)	53, 208, 247, 467, 509, 588, 611, 800, 889
Tru1I	TTAA	2 cut(s)	47, 1387
Tru9I	TTAA	2 cut(s)	47, 1387
TscAI	CASTG	2 cut(s)	661, 877
TseI	GCWGC	2 cut(s)	687, 1099
TspDTI	ATGAA	6 cut(s)	260, 472, 879, 891, 1178, 1229
TspGWI	ACGGA	1 cut(s)	487
TspRI	CASTG	2 cut(s)	661, 877
Van91I	CCANNNNNTGG	2 cut(s)	767, 1250
XagI	CCTNNNNNAGG	1 cut(s)	812
XapI	RAATTY	3 cut(s)	85, 237, 1276
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 1069
XmaJI	CCTAGG	1 cut(s)	1223
XspI	CTAG	5 cut(s)	129, 464, 809, 948, 1224
Zsp2I	ATGCAT	2 cut(s)	408, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.