Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

61285671 .. 61286259

Gene Structure 589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAATCGAGGATTTTGGGTGTTGGATATCTGAGGTTTGATCTTTTTGTGCAAATTGGGACTCATACATTCACCTACGATTATGTGTATGGTAGCACAGCACTGCCTTCTAGCTCAGTGTATGACGATTGTGTTTCTCCACTGGTGGATGCACTCTTCCATGGATACAATGCTACTGTGATTGCTTGCGGCCAGACGGGTTCGAGGAAGACGTATACGATGGGCACTAACTATTCTGGGGAAGGAAGCACTGGCGGAATCATACCGAAAGTGATGGAAACTATTTTCAAAAGAGTGGAGACAACGGCGCCATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

106

Amino Acids

11.51

Weight (kDa)

5.49

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	20 - 102	7e-21	Kinesin motor domain
Microtub_bd	PF16796	21 - 102	1.8e-12	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	215
AciI	CCGC	2 cut(s)	189, 255
AcoI	YGGCCR	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	215
BccI	CCATC	2 cut(s)	214, 268
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	147, 256
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	23, 129
BseNI	ACTGG	2 cut(s)	147, 256
BseSI	GKGCMC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	2 cut(s)	189, 255
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	2 cut(s)	24, 128
BspLI	GGNNCC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	147, 256
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	40
BssNAI	GTATAC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	160
Bst1107I	GTATAC	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	32, 115
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	4 cut(s)	101, 123, 140, 249
Cac8I	GCNNGC	1 cut(s)	187
CfoI	GCGC	1 cut(s)	310
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	2 cut(s)	114, 192
CviKI_1	RGCY	2 cut(s)	114, 192
DdeI	CTNAG	2 cut(s)	32, 115
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	29
EcoRV	GATATC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	1 cut(s)	164
FaiI	YATR	7 cut(s)	66, 84, 90, 123, 162, 216, 263
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	1 cut(s)	160
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	190
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	192
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	308
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	3 cut(s)	5, 61, 258
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	2 cut(s)	117, 236
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	52, 152
HpyF3I	CTNAG	2 cut(s)	32, 115
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	308
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	308
KasI	GGCGCC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	128, 206, 222, 237
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	148, 220
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	3 cut(s)	3, 27, 198
NarI	GGCGCC	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	5, 258
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	1 cut(s)	55
PluTI	GGCGCC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	38, 77, 116, 215
SfaNI	GCATC	1 cut(s)	139
SfoI	GGCGCC	1 cut(s)	309
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	189, 255
SspDI	GGCGCC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	8, 203
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	5, 258
TscAI	CASTG	4 cut(s)	108, 123, 147, 256
TspRI	CASTG	4 cut(s)	108, 123, 147, 256
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.