Rorug07G0291900
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001895
Physical Location & Seq
Forward (+)
28579088 .. 28582350
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0291900.1

Sequence Viewer

Length: 570 bp
ATGCAAAGTTCAGGAATGCCTTGGCCTGGTAATGAGGGTGAACAACGATGGGAACAAGCATGGTTGGCTATAAAAAAGGTCTGGGCTTCAAAGTGGAATGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGACCATGATTATCTTTGCATGGCTGTCCTTGTTCAAGAAATAATAAATGCCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTGTTAGGTTACCCTAGCAAACCGGTTGGCCTCTTTATCAGACGGTCCATAATCTTCCGATCCGATTCCAATGGTGAAGATCTTGAAGGTTATGCTGGTGCAGGCCTTTATGACAGTGTGCCTATGGATGCGGAAGAGGAAGTCGTGCTTGACTACTCATCTGACCCACTCGTTACTGATGGGAACTTCCAAAAGACAATTCTGTGCAGCATTGCTCGCGCATGA

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

4.88

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPDK_N PF01326 19 - 95 3.7e-14 Pyruvate phosphate dikinase, AMP/ATP-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 564
AciI CCGC 1 cut(s) 476
AclWI GGATC 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 97, 207
AfiI CCNNNNNNNGG 2 cut(s) 26, 224
AflII CTTAAG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 367
AgsI TTSAA 3 cut(s) 90, 170, 431
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 2 cut(s) 25, 292
AjuI GAANNNNNNNTTGG 4 cut(s) 264, 296, 528, 560
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 399
AoxI GGCC 3 cut(s) 23, 373, 448
ApeKI GCWGC 1 cut(s) 552
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AsiGI ACCGGT 1 cut(s) 367
AspLEI GCGC 1 cut(s) 566
AspS9I GGNCC 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 50, 431
AvaII GGWCC 1 cut(s) 390
AxyI CCTNAGG 1 cut(s) 342
BbvI GCAGC 1 cut(s) 564
BccI CCATC 3 cut(s) 42, 226, 518
BciT130I CCWGG 2 cut(s) 27, 294
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 360
BfrI CTTAAG 1 cut(s) 304
BglII AGATCT 1 cut(s) 424
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 27, 294
Bme18I GGWCC 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 27, 294
BmsI GCATC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 20, 249
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 224
Bse118I RCCGGY 1 cut(s) 367
Bse21I CCTNAGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 27, 294
BseDI CCNNGG 2 cut(s) 20, 249
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 2 cut(s) 26, 224
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 356
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 564
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 25, 375, 450
BshTI ACCGGT 1 cut(s) 367
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 26, 224
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 2 cut(s) 21, 194
BsnI GGCC 3 cut(s) 25, 375, 450
Bsp143I GATC 2 cut(s) 404, 424
BspACI CCGC 1 cut(s) 476
BspANI GGCC 3 cut(s) 25, 375, 450
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 564
BspPI GGATC 1 cut(s) 399
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 20, 249
BssMI GATC 2 cut(s) 404, 424
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 27, 294
Bst4CI ACNGT 2 cut(s) 390, 461
Bst6I CTCTTC 1 cut(s) 474
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 2 cut(s) 448, 562
BstDEI CTNAG 2 cut(s) 277, 342
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 1 cut(s) 566
BstKTI GATC 2 cut(s) 407, 427
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 404, 424
BstMWI GCNNNNNNNGC 3 cut(s) 65, 191, 561
BstNI CCWGG 2 cut(s) 27, 294
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 25, 292
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu36I CCTNAGG 1 cut(s) 342
BsuRI GGCC 3 cut(s) 25, 375, 450
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 448, 562
CfoI GCGC 1 cut(s) 566
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 1 cut(s) 390
CspAI ACCGGT 1 cut(s) 367
CviAII CATG 4 cut(s) 60, 140, 154, 567
CviJI RGCY 7 cut(s) 25, 68, 86, 158, 287, 375, 450
CviKI_1 RGCY 7 cut(s) 25, 68, 86, 158, 287, 375, 450
DdeI CTNAG 2 cut(s) 277, 342
DpnI GATC 2 cut(s) 406, 426
DpnII GATC 2 cut(s) 404, 424
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 97, 207
Eco81I CCTNAGG 1 cut(s) 342
Eco91I GGTNACC 1 cut(s) 353
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 2 cut(s) 25, 292
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 4 cut(s) 63, 143, 157, 570
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 4 cut(s) 59, 139, 153, 566
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 565
GluI GCNGC 1 cut(s) 553
HaeIII GGCC 3 cut(s) 25, 375, 450
HapII CCGG 1 cut(s) 368
HhaI GCGC 1 cut(s) 566
Hin1II CATG 4 cut(s) 63, 143, 157, 570
Hin6I GCGC 1 cut(s) 564
HinP1I GCGC 1 cut(s) 564
HinfI GANTC 3 cut(s) 230, 335, 410
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 50, 431
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 5 cut(s) 238, 386, 404, 409, 508
Hpy188III TCNNGA 5 cut(s) 12, 170, 225, 332, 428
Hpy8I GTNNAC 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 2 cut(s) 390, 461
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 4, 153, 194, 446, 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 191, 561
HpyF3I CTNAG 2 cut(s) 277, 342
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 4 cut(s) 63, 143, 157, 570
HspAI GCGC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 404, 424
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 2 cut(s) 353, 517
MalI GATC 2 cut(s) 406, 426
MboI GATC 2 cut(s) 404, 424
MboII GAAGA 4 cut(s) 213, 391, 434, 491
MflI RGATCY 1 cut(s) 424
MluCI AATT 2 cut(s) 131, 543
MlyI GAGTC 2 cut(s) 224, 329
MmeI TCCRAC 2 cut(s) 216, 262
MnlI CCTC 5 cut(s) 28, 244, 351, 386, 475
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 27, 294
Mva1269I GAATGC 2 cut(s) 21, 194
MvaI CCWGG 2 cut(s) 27, 294
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 3 cut(s) 65, 191, 561
NdeII GATC 2 cut(s) 404, 424
NlaIII CATG 4 cut(s) 63, 143, 157, 570
NmeAIII GCCGAG 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 196
PceI AGGCCT 1 cut(s) 450
PctI GAATGC 2 cut(s) 21, 194
PfeI GAWTC 1 cut(s) 410
PfoI TCCNGGA 1 cut(s) 292
PinAI ACCGGT 1 cut(s) 367
PkrI GCNGC 1 cut(s) 554
PleI GAGTC 2 cut(s) 224, 329
PpsI GAGTC 2 cut(s) 224, 329
Psp6I CCWGG 2 cut(s) 25, 292
PspEI GGTNACC 1 cut(s) 353
PspGI CCWGG 2 cut(s) 25, 292
PspPI GGNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 424
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 2 cut(s) 404, 424
Sau96I GGNCC 1 cut(s) 390
SchI GAGTC 2 cut(s) 224, 329
ScrFI CCNGG 2 cut(s) 27, 294
SetI ASST 9 cut(s) 81, 255, 265, 278, 289, 301, 348, 355, 436
SfaNI GCATC 1 cut(s) 463
SinI GGWCC 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 2 cut(s) 131, 543
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 360
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 25, 292
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 390, 461
TaiI ACGT 1 cut(s) 301
TasI AATT 2 cut(s) 131, 543
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 466
TseI GCWGC 1 cut(s) 552
TspRI CASTG 1 cut(s) 466
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 390
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.