Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Forward (+)

53441524 .. 53443372

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG391900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCGCACCGTGCTGCACATCGCCGCCTGCGAGGGTCACGTTGACGTTTGCAGGTGCAAATTGGGACTCATACATTCACCGCACAGCACTGCCTTCTAGCTTAGTGTATGATGATTGTGTTGCTCCACTCGTGGATGCGCTCTTCCATGGATACAATGCTACTGTGCTACTTACGGCCAGGCCAGAGAAAGAATTGCAGGATATAATTCATGGTGCAAATTGGGACTCATACATTCACCGCACAGCACTGCCTTCTAGCTTAGTGTATGATGATAGTGTTGCTCCACTCGTGGATGCGCTCTTCCATGGATACAATGCTACTGTGCTACTTACAGCCAGGCCAGAGAAAGAATTGCAGGATATAATTCATGGTATGGGTTGTTCAAATTGGAATAATGTTGCAGTGAAGAATTTAACTCCTACCTTAAGATTTAATGCATTTCTTGTCATTCCGGATCAGATAACCCAAAGCCAAGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

161

Amino Acids

17.76

Weight (kDa)

5.3

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	454
AciI	CCGC	3 cut(s)	26, 82, 241
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	412
AflII	CTTAAG	1 cut(s)	427
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	2 cut(s)	179, 338
AluBI	AGCT	2 cut(s)	102, 261
AluI	AGCT	2 cut(s)	102, 261
Alw21I	GWGCWC	1 cut(s)	483
AlwI	GGATC	1 cut(s)	465
Aor13HI	TCCGGA	1 cut(s)	454
AoxI	GGCC	3 cut(s)	177, 182, 341
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	2 cut(s)	142, 301
AsuHPI	GGTGA	2 cut(s)	71, 230
BauI	CACGAG	2 cut(s)	131, 290
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	2
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	181, 340
BciVI	GTATCC	2 cut(s)	146, 305
BfaI	CTAG	3 cut(s)	99, 258, 484
BfrI	CTTAAG	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	44
BfuI	GTATCC	2 cut(s)	146, 305
BisI	GCNGC	2 cut(s)	16, 26
BlsI	GCNGC	2 cut(s)	17, 27
Bme1390I	CCNGG	2 cut(s)	181, 340
BmrFI	CCNGG	2 cut(s)	181, 340
BmsI	GCATC	2 cut(s)	127, 286
BsaJI	CCNNGG	2 cut(s)	148, 307
BsaWI	WCCGGW	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	454
BseBI	CCWGG	2 cut(s)	181, 340
BseDI	CCNNGG	2 cut(s)	148, 307
BseGI	GGATG	2 cut(s)	142, 301
BseXI	GCAGC	1 cut(s)	2
BshFI	GGCC	3 cut(s)	179, 184, 343
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	2 cut(s)	80, 239
BsmFI	GGGAC	2 cut(s)	80, 239
BsnI	GGCC	3 cut(s)	179, 184, 343
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	454
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	2 cut(s)	148, 307
BspACI	CCGC	3 cut(s)	26, 82, 241
BspANI	GGCC	3 cut(s)	179, 184, 343
BspEI	TCCGGA	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	44
BspPI	GGATC	1 cut(s)	465
BspQI	GCTCTTC	2 cut(s)	149, 308
BspTI	CTTAAG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	148, 307
BssMI	GATC	1 cut(s)	457
BssSI	CACGAG	2 cut(s)	131, 290
BssT1I	CCWWGG	2 cut(s)	148, 307
Bst2BI	CACGAG	2 cut(s)	131, 290
Bst2UI	CCWGG	2 cut(s)	181, 340
Bst4CI	ACNGT	3 cut(s)	12, 166, 325
Bst6I	CTCTTC	2 cut(s)	149, 308
BstAFI	CTTAAG	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	103, 262
BstDSI	CCRYGG	2 cut(s)	148, 307
BstF5I	GGATG	2 cut(s)	142, 301
BstHHI	GCGC	2 cut(s)	142, 301
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	181, 340
BstSCI	CCNGG	2 cut(s)	179, 338
BstV1I	GCAGC	1 cut(s)	2
BsuI	GTATCC	2 cut(s)	146, 305
BsuRI	GGCC	3 cut(s)	179, 184, 343
BtgI	CCRYGG	2 cut(s)	148, 307
BtgZI	GCGATG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	142, 301
BtsI	GCAGTG	3 cut(s)	89, 248, 411
BtsIMutI	CAGTG	3 cut(s)	89, 248, 411
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	2 cut(s)	142, 301
CviAII	CATG	4 cut(s)	149, 212, 308, 371
CviJI	RGCY	7 cut(s)	102, 179, 184, 261, 338, 343, 474
CviKI_1	RGCY	7 cut(s)	102, 179, 184, 261, 338, 343, 474
DdeI	CTNAG	2 cut(s)	103, 262
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	149, 308
EarI	CTCTTC	2 cut(s)	149, 308
Eco130I	CCWWGG	2 cut(s)	148, 307
EcoRII	CCWGG	2 cut(s)	179, 338
EcoT14I	CCWWGG	2 cut(s)	148, 307
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	2 cut(s)	148, 307
FaeI	CATG	4 cut(s)	152, 215, 311, 374
FaqI	GGGAC	2 cut(s)	80, 239
FatI	CATG	4 cut(s)	148, 211, 307, 370
Fnu4HI	GCNGC	2 cut(s)	16, 26
FokI	GGATG	2 cut(s)	149, 308
Fsp4HI	GCNGC	2 cut(s)	16, 26
FspBI	CTAG	3 cut(s)	99, 258, 484
GlaI	GCGC	2 cut(s)	141, 300
GluI	GCNGC	2 cut(s)	16, 26
HaeIII	GGCC	3 cut(s)	179, 184, 343
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	2 cut(s)	142, 301
Hin1II	CATG	4 cut(s)	152, 215, 311, 374
Hin6I	GCGC	2 cut(s)	140, 299
HinP1I	GCGC	2 cut(s)	140, 299
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	68, 227
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	71, 230
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	462
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	105, 264
HpyCH4III	ACNGT	3 cut(s)	12, 166, 325
HpyCH4IV	ACGT	2 cut(s)	41, 47
HpyCH4V	TGCA	8 cut(s)	18, 53, 59, 199, 218, 358, 404, 440
HpyF3I	CTNAG	2 cut(s)	103, 262
HpySE526I	ACGT	2 cut(s)	41, 47
Hsp92II	CATG	4 cut(s)	152, 215, 311, 374
HspAI	GCGC	2 cut(s)	140, 299
Kpn2I	TCCGGA	1 cut(s)	454
Kzo9I	GATC	1 cut(s)	457
LguI	GCTCTTC	2 cut(s)	149, 308
LmnI	GCTCC	2 cut(s)	130, 289
Lsp1109I	GCAGC	1 cut(s)	2
LweI	GCATC	2 cut(s)	127, 286
MaeI	CTAG	3 cut(s)	99, 258, 484
MaeII	ACGT	2 cut(s)	41, 47
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	3 cut(s)	136, 295, 421
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	8 cut(s)	61, 194, 207, 220, 353, 366, 388, 412
MlyI	GAGTC	2 cut(s)	62, 221
MnlI	CCTC	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	442
MroI	TCCGGA	1 cut(s)	454
MseI	TTAA	3 cut(s)	416, 428, 435
MspCI	CTTAAG	1 cut(s)	427
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	181, 340
MvaI	CCWGG	2 cut(s)	181, 340
NcoI	CCATGG	2 cut(s)	148, 307
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	152, 215, 311, 374
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	44
PciSI	GCTCTTC	2 cut(s)	149, 308
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	17, 27
PleI	GAGTC	2 cut(s)	62, 221
PpsI	GAGTC	2 cut(s)	62, 221
Psp6I	CCWGG	2 cut(s)	179, 338
PspGI	CCWGG	2 cut(s)	179, 338
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
SapI	GCTCTTC	2 cut(s)	149, 308
SaqAI	TTAA	3 cut(s)	416, 428, 435
SatI	GCNGC	2 cut(s)	16, 26
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	62, 221
ScrFI	CCNGG	2 cut(s)	181, 340
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	6 cut(s)	44, 50, 58, 104, 263, 428
SfaNI	GCATC	2 cut(s)	127, 286
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	8 cut(s)	61, 194, 207, 220, 353, 366, 388, 412
SsiI	CCGC	3 cut(s)	26, 82, 241
SspMI	CTAG	3 cut(s)	99, 258, 484
StyD4I	CCNGG	2 cut(s)	179, 338
StyI	CCWWGG	2 cut(s)	148, 307
TaaI	ACNGT	3 cut(s)	12, 166, 325
TaiI	ACGT	2 cut(s)	44, 50
TasI	AATT	8 cut(s)	61, 194, 207, 220, 353, 366, 388, 412
TauI	GCSGC	1 cut(s)	28
Tru1I	TTAA	3 cut(s)	416, 428, 435
Tru9I	TTAA	3 cut(s)	416, 428, 435
TscAI	CASTG	3 cut(s)	96, 255, 411
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	200, 359
TspRI	CASTG	3 cut(s)	96, 255, 411
Vha464I	CTTAAG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	412
XspI	CTAG	3 cut(s)	99, 258, 484
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.