Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Forward (+)

62410669 .. 62414800

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAAAGACTTCTTCACTGAAACTTCTGGTCATAATGCTCATGGTATTCAGGCTCTGATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACTCATGAAGTAAGATCTGAGTATGAGCTGCAAATTGAAGAGCGTGCTATGATGGCCAAGGAAAGAACCAAGCTAATAGAAGAACAACGTAATTTAAGTGATTCCTCAGAAATAATGTCTCCTGGTGCAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGCGGGCTTCTTCCTCCAGGTGCCTGTTACGAGATAAAGAAGTTGCATACAGAGAGAAGGATTTGGAAATAAGAGATTTGAAGGAAAAAGTTGTAAGCCTCAGTAGTTCGCTCAGGAAGTTGGAGAATAAGAATGCTGAACTTATGCATCAGAACTCAGCGTTGAAGAAATCTGAAAATGGACACAAGTATGATTTGCGCAAGCTAGATCAATTAAACGAAGCATGGAAGAAGATGAAATCCAGCACAGACTCCACTATCCTACCCAAACGGAGAGCTCAGGCCAAGAAAGAAGCAATAACTCTGCCTGAGGCTGAGCATCAGCATACAGATCTTGTTGGTGACATCGAGCAGTCTCTTGATTTCTCTCACCATGCCACGCTTTTCCACCAGCAAACCGGCTATTTTCTCATGGTAAATGTGACCTTAATGGGCTCTTGTTACCCAGATATTCCCCTACTTTCCTGGAGATTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

266

Amino Acids

30.52

Weight (kDa)

6.09

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	521
AccB1I	GGYRCC	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	1 cut(s)	321
AciI	CCGC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	229
AgsI	TTSAA	6 cut(s)	83, 134, 234, 251, 403, 487
AjnI	CCWGG	3 cut(s)	217, 338, 785
AluBI	AGCT	5 cut(s)	79, 124, 169, 526, 599
AluI	AGCT	5 cut(s)	79, 124, 169, 526, 599
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	2 cut(s)	219, 681
AlwNI	CAGNNNCTG	1 cut(s)	55
AoxI	GGCC	2 cut(s)	150, 603
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	321, 522
AsuHPI	GGTGA	2 cut(s)	674, 683
AxyI	CCTNAGG	1 cut(s)	630
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BalI	TGGCCA	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	601, 758
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	142
BciT130I	CCWGG	3 cut(s)	219, 340, 787
BcoDI	GTCTC	2 cut(s)	219, 681
BfaI	CTAG	3 cut(s)	273, 527, 799
BglII	AGATCT	2 cut(s)	110, 652
BisI	GCNGC	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	3 cut(s)	219, 340, 787
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	219, 340, 787
BmsI	GCATC	4 cut(s)	48, 302, 478, 649
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	2 cut(s)	434, 600
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	153, 279
Bse118I	RCCGGY	1 cut(s)	719
Bse21I	CCTNAGG	1 cut(s)	630
BseBI	CCWGG	3 cut(s)	219, 340, 787
BseDI	CCNNGG	2 cut(s)	153, 279
BseMII	CTCAG	8 cut(s)	105, 216, 436, 448, 492, 614, 621, 627
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	152, 605
BshNI	GGYRCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	720
BsmAI	GTCTC	2 cut(s)	219, 681
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	152, 605
Bsp1286I	GDGCHC	2 cut(s)	601, 758
Bsp143I	GATC	3 cut(s)	110, 529, 652
Bsp1720I	GCTNAGC	1 cut(s)	636
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	152, 605
BspCNI	CTCAG	8 cut(s)	106, 215, 435, 447, 491, 613, 622, 628
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	344
BspQI	GCTCTTC	2 cut(s)	129, 309
BspT107I	GGYRCC	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	719
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	2 cut(s)	153, 279
BssMI	GATC	3 cut(s)	110, 529, 652
BssT1I	CCWWGG	2 cut(s)	153, 279
Bst2UI	CCWGG	3 cut(s)	219, 340, 787
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	2 cut(s)	129, 309
BstC8I	GCNNGC	6 cut(s)	63, 141, 261, 323, 327, 524
BstDEI	CTNAG	8 cut(s)	114, 202, 422, 434, 478, 600, 630, 636
BstDSI	CCRYGG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	321, 522
BstKTI	GATC	3 cut(s)	113, 532, 655
BstMAI	GTCTC	2 cut(s)	219, 681
BstMBI	GATC	3 cut(s)	110, 529, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	3 cut(s)	219, 340, 787
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	3 cut(s)	217, 338, 785
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	110, 652
BstYI	RGATCY	2 cut(s)	110, 652
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	152, 605
BtgI	CCRYGG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	6 cut(s)	63, 141, 261, 323, 327, 524
CaiI	CAGNNNCTG	1 cut(s)	55
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	2 cut(s)	321, 522
Cfr10I	RCCGGY	1 cut(s)	719
CviAII	CATG	7 cut(s)	41, 101, 256, 280, 546, 695, 733
DdeI	CTNAG	8 cut(s)	114, 202, 422, 434, 478, 600, 630, 636
DpnI	GATC	3 cut(s)	112, 531, 654
DpnII	GATC	3 cut(s)	110, 529, 652
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	129, 309
EarI	CTCTTC	2 cut(s)	129, 309
Ecl136II	GAGCTC	1 cut(s)	599
Eco130I	CCWWGG	2 cut(s)	153, 279
Eco24I	GRGCYC	2 cut(s)	601, 758
Eco53kI	GAGCTC	1 cut(s)	599
Eco81I	CCTNAGG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	217, 338, 785
EcoT14I	CCWWGG	2 cut(s)	153, 279
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	601, 758
ErhI	CCWWGG	2 cut(s)	153, 279
FaeI	CATG	7 cut(s)	44, 104, 259, 283, 549, 698, 736
FatI	CATG	7 cut(s)	40, 100, 255, 279, 545, 694, 732
FauI	CCCGC	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	125
FriOI	GRGCYC	2 cut(s)	601, 758
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	3 cut(s)	273, 527, 799
FspI	TGCGCA	1 cut(s)	521
GlaI	GCGC	2 cut(s)	320, 521
GluI	GCNGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	152, 605
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	2 cut(s)	321, 522
Hin1II	CATG	7 cut(s)	44, 104, 259, 283, 549, 698, 736
Hin6I	GCGC	2 cut(s)	319, 520
HinP1I	GCGC	2 cut(s)	319, 520
HinfI	GANTC	4 cut(s)	97, 197, 572, 792
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	2 cut(s)	674, 683
Hpy188I	TCNGA	6 cut(s)	57, 115, 205, 307, 474, 496
Hpy188III	TCNNGA	3 cut(s)	101, 436, 680
HpyAV	CCTTC	2 cut(s)	373, 397
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	6 cut(s)	61, 127, 224, 245, 368, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	8 cut(s)	114, 202, 422, 434, 478, 600, 630, 636
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	7 cut(s)	44, 104, 259, 283, 549, 698, 736
HspAI	GCGC	2 cut(s)	319, 520
Kzo9I	GATC	3 cut(s)	110, 529, 652
LguI	GCTCTTC	2 cut(s)	129, 309
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	4 cut(s)	48, 302, 478, 649
MaeI	CTAG	3 cut(s)	273, 527, 799
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	5 cut(s)	85, 348, 662, 742, 761
MalI	GATC	3 cut(s)	112, 531, 654
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	3 cut(s)	110, 529, 652
MboII	GAAGA	9 cut(s)	4, 146, 188, 261, 324, 326, 499, 562, 565
MfeI	CAATTG	1 cut(s)	299
MflI	RGATCY	2 cut(s)	110, 652
MhlI	GDGCHC	2 cut(s)	601, 758
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	5 cut(s)	129, 187, 229, 299, 533
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	91, 566
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	4 cut(s)	211, 346, 431, 625
Mox20I	TGGCCA	1 cut(s)	152
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	4 cut(s)	93, 191, 536, 749
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	3 cut(s)	219, 340, 787
MunI	CAATTG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	3 cut(s)	219, 340, 787
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	3 cut(s)	110, 529, 652
NlaIII	CATG	7 cut(s)	44, 104, 259, 283, 549, 698, 736
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	85, 662, 742
NsbI	TGCGCA	1 cut(s)	521
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	1 cut(s)	259
PagI	TCATGA	1 cut(s)	100
PciSI	GCTCTTC	2 cut(s)	129, 309
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	197, 792
PfoI	TCCNGGA	1 cut(s)	785
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	2 cut(s)	91, 566
PpsI	GAGTC	2 cut(s)	91, 566
Psp124BI	GAGCTC	1 cut(s)	601
Psp6I	CCWGG	3 cut(s)	217, 338, 785
PspGI	CCWGG	3 cut(s)	217, 338, 785
PspN4I	GGNNCC	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	110, 652
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	601
SapI	GCTCTTC	2 cut(s)	129, 309
SaqAI	TTAA	4 cut(s)	93, 191, 536, 749
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	3 cut(s)	110, 529, 652
SchI	GAGTC	2 cut(s)	91, 566
ScrFI	CCNGG	3 cut(s)	219, 340, 787
SduI	GDGCHC	2 cut(s)	601, 758
SetI	ASST	8 cut(s)	81, 126, 171, 187, 344, 528, 601, 749
SfaNI	GCATC	4 cut(s)	48, 302, 478, 649
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	129, 187, 229, 299, 533
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	3 cut(s)	273, 527, 799
SstI	GAGCTC	1 cut(s)	601
StyD4I	CCNGG	3 cut(s)	217, 338, 785
StyI	CCWWGG	2 cut(s)	153, 279
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	69, 669
TasI	AATT	5 cut(s)	129, 187, 229, 299, 533
TfiI	GAWTC	2 cut(s)	197, 792
Tru1I	TTAA	4 cut(s)	93, 191, 536, 749
Tru9I	TTAA	4 cut(s)	93, 191, 536, 749
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	3 cut(s)	85, 662, 742
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	3 cut(s)	85, 662, 742
TspDTI	ATGAA	3 cut(s)	17, 117, 572
TspGWI	ACGGA	1 cut(s)	607
TspRI	CASTG	1 cut(s)	22
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	273, 527, 799
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.