Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

29361127 .. 29365905

Gene Structure 4779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGCAGCCTCTGCCGCCGCCGGTCCAGCTCGGCGAGATCACCGAGGAGGAGCTGAAGCAGTACGACGGATCCGATCCCAAGAGGCCTATGCTTACGGATTCAATTACTCCTTCCTCTTCTCCTCTCACCCGTTCATGTCCATACGATGTGTTTTTGAGTTTTAGAGGTGTGGATACACGAAACAACTTCACAGGCCATTTGCACACTTATTTGGTTCAGAAGGGAATTAATACCTTCATAGATGACGATGAGCTTAGAAAAGGAGAAGAAATATCATCTGCACTTCTCAAAGCAATTGAAGGGTCAAAGATTTCTATAGTTATATTCTCTGAAAACTACGCATCCTCAGGGTGGTGTTTGGATGAACTTGTTAAAATCCTTCAATGTATGGAGTTGAAGCAACAATTGGTTTGGCCGGTGTTTTACAAGGTGGATCCTTCCGACGTACGGTACCAGAAGGGTAAATTTGGTCAGGCATTTGCTAAACATGAGTGCAGATTCAAGGACAACATGGACAAGGTACAAAGATGGAGGTCGGCTCTTAGGGATGCAGCAAATATATCAGGGTGGACTTTCTGGGACGGGGATCATGAAGCTAAGTTTATTAGTAAGATTGCTGAAGATATTTCAGCACAAGTATCAAAACGTAGCTATTTAAATGTGGCAAAGTATCCCGTTGGAATAGAGTCTCGTGTACAAGATATGCTTAAACTTTTAGATGTCGGAGGAAGTGAGGTTCGCATGGTTGGTATATGGGGTATTGGTGGGTTAGGCAAAACAACAATTGCTAAAGCTGTTTACAACTCAATTGCCCATAAGTTTGAAGGTTGCTGTTTCTTGGGAAATGTTAGAGCAGATTCAGAACCCCATCCAGGCCTAGTTCGACTACAAAATAATCTTCTTTATGAGATTTTAGGGGGCCAGGAAATGAAGATGACCGATGTTGATAGAGGAATTCAGGTGATAAAGGACAGGTTGGGTAGCAAAAGGGTTCTCTTAGTTCTTGATGATGTGAATGAAATGAACCAGTTGGACAAATTAGCTGGAGGATTGGATTGGTTTGGTTGTGGAAGCAGAATTATCATAACAACAAGAGATAAACATTTGTTAATTGCACATCAAGTCTATCCTATATATACTGCCAAGGCATTAGATAATGATGAAGCTCGTAACCTCTTGACTTTGAATGCCTTCAAGGAAAACAGAAATCCAGATGAGTGTGTGAAATTCCCAATTGATACTGCTCTACTGTATGCTCACGGCCTTCCATTAGCTATAAACATTTTAGGTTCAGGTCTCTGTGGTAAGGGTATAAATCAATGGCATGCTGCATTAGATGGTTACAGAAGATTTCTTAACAGCGATATCCAAAAAGTTCTTCAAATAAGTTACAATGCATTGGAAGATCCGTTGAAAGAAGCATTTCTCGACATTGCATGTTTCTTAAAAGGTGAAGATAAGGGGTATGTGATGCACGCACTAGAGGGTTCTTACCTCAACCCTTTACATGCTATTGAAGTACTTGAAGAAAAGGCCCTCGTAAATACTAGTGAATTTGGTAAGATTTGGATGCATGACTTGCTGGAGGATATGGGAAAAGAAATTGTTCGTAAAGAGTCACCCGCAGATGCTGGCAGACGTAGCAGACTATGGTTTCATGAGGATGTTTATCGTGTTTTAACCGAAAATACAGGCTCAAAAAAAGTTAAAGGCATCAGAGTAGAGCTACCAAGAGAAGATGAGATATGCTTGAGTGCTAAATGCTTTAAAAAGATGAAAAATCTTCAACTTTTTATAAACATTAATGCACGCTTCTCTGGAGAGGTTAATTATCTCCCAAATCAGTTGAGGTTCCTTGATTGGCCTGGATTCCCAGCACAATATTTGCCATCCGACTTCAATCCACAAAAACTAGTTAAGCTCAATATGACAAACAGTCGATTCTCACGACTTGGGCAAGGACTCAAGAATTTGCAAAATTTGAAATCTCTAAGCTTCAGAAGTTGCAAATTCCTAAGAGAATTCCCCGACTTGTCTGGAATGTTCCCAAATTTGGAGAGGTTGGATTTAAATTCCTGTACAAGTTTAGCTGAGCTGCATCCTTCTGTTGGATTCCTTGATAAGCTTGTTGACTTCAATCTTAAAGATTGCTCTAATCTTAAGATGTTTCCAAAAATAGTAAACATGAAATCTCTGCAAAATATTGATTTGAGAGGCTGCAAGAGGCTCAAGAACTTCCCAGAATTTGAGGGAAGGATGGAATCCTTAACACACATGAATGTATCTGAAACTGCCATCAAAGAAGTGCCATCATCAATTGGACATGATCTATTTAATCTTCAATTTTTTATGTTACAAAAATGTGAAAACCTTTCGAATCTGCCACTCAGCATTCATGAGTTACAAAAGCTAGTTTATTTTGAACTCACAGGTTGCCCAAAACTGGTGCTTCCATTTCCGAATGAGGTGAAATACTGTGAAGTGCCAACTTCAACGTCTAACTCAAAGATTTCACGTTACAGCAAGGCAACTTCATCAGAAAGAGAAAGTCATAGTGACAGTGATGGTGCTGATGATGATCGAGGCAATTTAACGTTTCCTTCACTAGAGTACTTTGATGCTGGAGGATGCAATATTTCAAATTGTGATTTCCTCGTGACGCTTGGTTGTGCCTCCACCTTAGACACGCTTAATTTTTCAGAAAGCAATTTTGTTAGTCTTCCCGCTTGCCTTGCTACCAAGTTTATCAACTTGAAGAAGCTTAACTTGAATGGGTGCAAAAGGCTTCAAGAGGTTCCGGGGCTTCCACCAAATTTGGTAGTGTTAGATGTGAGAGATTGCGTATCATTGGAAAGAATTTCAAAGTTATCAAACATTTTGAAACATCAAGAATCGCAAATGTTTGAGTGGCTGGACTTGACCAATTGTTGGAGACTGTGTGATAATCTGGTTCAGGAGGCAGAGAAGAAGTTTGATCATCATGTGGAGGCCGATCTCTTCTCTCTTTTTCTCTCTTCTCAGAAGTCTGCATTCGGGGTTGTATGTCCAGCAATTCATGAAATTCCAAAGTGGTTCAGTTGTCAAATGGATTTCATAGGGAATGGACTGTTTGAATTTTATATTCAAGTCCTCCCTAATTTCAAATGGCACAACACAGGATTGGCTCTATGTGTTGCTGGCGAAAAGGTGCTAGATTGGCAATTCGAAATTCGTATCAATGAAGCAAGAGTGACAGATCGTTGTTTCAATGAAGGTGATTCGGCTCTTCTGGGGATGCAGTATATTCCGTTCGATACAATTCCATTTGATTCGCTGCCACCGTTTATCTGTCGAGTTAGTATTCAACAAAATCTCCGTTCTAACAAGGTTCCCTTGAAACGCTGCGGAGTTCACCTGTGGACTATTTTTATGAACCCAAATCAAATGACTCTCACAGCTCAAGAGAAGAAGGACCGTCAGGACTCAAGAGCCGAATTGATTTTTAATTGGATCAATGAAATGGCTGGTCACAGGATTGCTGATGCTGAAGGACCAAGTGTTGTCAATAAGATCTGTAGCATCACCGTGCTTGCCTTGGTGCATCACTGGAATGACCACAGGAAAGTGAAGGCACTAATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1207

Amino Acids

136.92

Weight (kDa)

6.45

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	48 - 214	5.2e-58	TIR domain
TIR_2	PF13676	50 - 146	3.1e-14	TIR domain
NB-ARC	PF00931	233 - 401	1.6e-18	NB-ARC domain
WHD_ROQ1	PF23282	472 - 540	2.1e-14	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	720 - 812	6.7e-06	Leucine-rich repeat region
LRR_13	PF23286	730 - 819	3.4e-08	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13	PF23286	870 - 962	1.8e-10	Disease resistance protein RPS4B-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1796
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	2928
AciI	CCGC	5 cut(s)	14, 17, 1623, 2724, 3384
AclI	AACGTT	1 cut(s)	2594
AclWI	GGATC	8 cut(s)	63, 68, 76, 428, 441, 594, 1400, 3497
AcoI	YGGCCR	1 cut(s)	413
AcuI	CTGAAG	4 cut(s)	74, 639, 1981, 3546
AfaI	GTAC	8 cut(s)	62, 447, 452, 522, 696, 1521, 2080, 2612
AfiI	CCNNNNNNNGG	7 cut(s)	351, 447, 872, 2053, 2108, 2443, 2928
AflII	CTTAAG	1 cut(s)	2159
AhdI	GACNNNNNGTC	1 cut(s)	1935
AhlI	ACTAGT	2 cut(s)	1547, 1912
AjnI	CCWGG	3 cut(s)	871, 921, 1864
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 1362, 1394
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
Alw26I	GTCTC	3 cut(s)	693, 1301, 2926
AlwI	GGATC	8 cut(s)	63, 68, 76, 428, 441, 594, 1400, 3497
AlwNI	CAGNNNCTG	2 cut(s)	10, 1631
AoxI	GGCC	9 cut(s)	83, 193, 413, 874, 919, 1261, 1533, 1862, 2988
ApeKI	GCWGC	7 cut(s)	4, 551, 1328, 2095, 2217, 3313, 3381
AseI	ATTAAT	2 cut(s)	228, 1803
Asp700I	GAANNNNTTC	3 cut(s)	1190, 1422, 1605
Asp718I	GGTACC	1 cut(s)	450
AspS9I	GGNCC	5 cut(s)	22, 919, 1534, 3451, 3530
AsuC2I	CCSGG	1 cut(s)	2799
AsuHPI	GGTGA	9 cut(s)	31, 118, 973, 1463, 1611, 2479, 3266, 3383, 3553
AsuII	TTCGAA	2 cut(s)	2375, 3204
AvaII	GGWCC	3 cut(s)	22, 3451, 3530
AxyI	CCTNAGG	1 cut(s)	346
BamHI	GGATCC	2 cut(s)	68, 433
BanI	GGYRCC	1 cut(s)	450
BauI	CACGAG	2 cut(s)	690, 2654
BbsI	GAAGAC	1 cut(s)	2711
BbvI	GCAGC	7 cut(s)	16, 563, 1315, 2082, 2204, 3300, 3368
BccI	CCATC	8 cut(s)	522, 876, 1331, 1897, 2251, 2303, 2317, 2558
BceAI	ACGGC	1 cut(s)	1276
BciT130I	CCWGG	3 cut(s)	873, 923, 1866
BciVI	GTATCC	2 cut(s)	166, 681
BclI	TGATCA	1 cut(s)	2974
BcnI	CCSGG	1 cut(s)	2799
BcoDI	GTCTC	3 cut(s)	693, 1301, 2926
BcuI	ACTAGT	2 cut(s)	1547, 1912
BfaI	CTAG	7 cut(s)	878, 1481, 1548, 1913, 2411, 2606, 3191
BfmI	CTRYAG	2 cut(s)	315, 3553
BfrI	CTTAAG	1 cut(s)	2159
BfuI	GTATCC	2 cut(s)	166, 681
BglII	AGATCT	1 cut(s)	3549
BisI	GCNGC	9 cut(s)	5, 14, 17, 552, 1329, 2096, 2218, 3314, 3382
BlpI	GCTNAGC	1 cut(s)	2091
BlsI	GCNGC	9 cut(s)	6, 15, 18, 553, 1330, 2097, 2219, 3315, 3383
BmcAI	AGTACT	2 cut(s)	1521, 2612
Bme1390I	CCNGG	4 cut(s)	873, 923, 1866, 2799
Bme18I	GGWCC	3 cut(s)	22, 3451, 3530
BmeRI	GACNNNNNGTC	1 cut(s)	1935
BmgT120I	GGNCC	5 cut(s)	22, 919, 1534, 3451, 3530
BmiI	GGNNCC	7 cut(s)	70, 435, 452, 920, 1853, 2796, 3369
BmrFI	CCNGG	4 cut(s)	873, 923, 1866, 2799
BpiI	GAAGAC	1 cut(s)	2711
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	4 cut(s)	1065, 1604, 1839, 2643
Bpu1102I	GCTNAGC	1 cut(s)	2091
Bpu14I	TTCGAA	2 cut(s)	2375, 3204
BpuEI	CTTGAG	5 cut(s)	1771, 1949, 2213, 3423, 3448
BpuMI	CCSGG	1 cut(s)	2799
BsaBI	GATNNNNATC	2 cut(s)	1668, 2577
BsaI	GGTCTC	1 cut(s)	1301
BsaJI	CCNNGG	4 cut(s)	42, 1143, 2798, 3573
BsaXI	ACNNNNNCTCC	4 cut(s)	2923, 2953, 3336, 3366
Bsc4I	CCNNNNNNNGG	7 cut(s)	351, 447, 872, 2053, 2108, 2443, 2928
Bse118I	RCCGGY	2 cut(s)	19, 415
Bse1I	ACTGG	3 cut(s)	1027, 2448, 3590
Bse21I	CCTNAGG	1 cut(s)	346
Bse3DI	GCAATG	1 cut(s)	1431
Bse8I	GATNNNNATC	2 cut(s)	1668, 2577
BseBI	CCWGG	3 cut(s)	873, 923, 1866
BseDI	CCNNGG	4 cut(s)	42, 1143, 2798, 3573
BseJI	GATNNNNATC	2 cut(s)	1668, 2577
BseLI	CCNNNNNNNGG	7 cut(s)	351, 447, 872, 2053, 2108, 2443, 2928
BseMI	GCAATG	1 cut(s)	1431
BseMII	CTCAG	4 cut(s)	360, 2082, 2401, 3032
BseNI	ACTGG	3 cut(s)	1027, 2448, 3590
BseRI	GAGGAG	3 cut(s)	59, 62, 111
BseXI	GCAGC	7 cut(s)	16, 563, 1315, 2082, 2204, 3300, 3368
BseYI	CCCAGC	1 cut(s)	1873
BsgI	GTGCAG	2 cut(s)	264, 514
BshFI	GGCC	9 cut(s)	85, 195, 415, 876, 921, 1263, 1535, 1864, 2990
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	20, 416, 2798
BsiWI	CGTACG	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	7 cut(s)	351, 447, 872, 2053, 2108, 2443, 2928
BsmAI	GTCTC	3 cut(s)	693, 1301, 2926
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	3 cut(s)	1192, 2391, 3029
BsnI	GGCC	9 cut(s)	85, 195, 415, 876, 921, 1263, 1535, 1864, 2990
Bso31I	GGTCTC	1 cut(s)	1301
Bsp119I	TTCGAA	2 cut(s)	2375, 3204
Bsp1407I	TGTACA	2 cut(s)	694, 2078
Bsp1720I	GCTNAGC	1 cut(s)	2091
BspACI	CCGC	5 cut(s)	14, 17, 1623, 2724, 3384
BspANI	GGCC	9 cut(s)	85, 195, 415, 876, 921, 1263, 1535, 1864, 2990
BspCNI	CTCAG	4 cut(s)	359, 2083, 2400, 3031
BspHI	TCATGA	4 cut(s)	589, 1657, 2395, 3055
BspLI	GGNNCC	7 cut(s)	70, 435, 452, 920, 1853, 2796, 3369
BspPI	GGATC	8 cut(s)	63, 68, 76, 428, 441, 594, 1400, 3497
BspQI	GCTCTTC	1 cut(s)	3270
BspT104I	TTCGAA	2 cut(s)	2375, 3204
BspT107I	GGYRCC	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	2159
BspTNI	GGTCTC	1 cut(s)	1301
BsrDI	GCAATG	1 cut(s)	1431
BsrFI	RCCGGY	2 cut(s)	19, 415
BsrGI	TGTACA	2 cut(s)	694, 2078
BsrI	ACTGG	3 cut(s)	1027, 2448, 3590
BssAI	RCCGGY	2 cut(s)	19, 415
BssECI	CCNNGG	4 cut(s)	42, 1143, 2798, 3573
BssSI	CACGAG	2 cut(s)	690, 2654
BssT1I	CCWWGG	2 cut(s)	1143, 3573
Bst2BI	CACGAG	2 cut(s)	690, 2654
Bst2UI	CCWGG	3 cut(s)	873, 923, 1866
Bst6I	CTCTTC	4 cut(s)	121, 3002, 3019, 3270
BstAFI	CTTAAG	1 cut(s)	2159
BstAPI	GCANNNNNTGC	2 cut(s)	10, 1579
BstAUI	TGTACA	2 cut(s)	694, 2078
BstBI	TTCGAA	2 cut(s)	2375, 3204
BstC8I	GCNNGC	7 cut(s)	1326, 1476, 1633, 1810, 2728, 3178, 3570
BstMAI	GTCTC	3 cut(s)	693, 1301, 2926
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 13, 25, 1579, 1641, 2732, 3196
BstNI	CCWGG	3 cut(s)	873, 923, 1866
BstNSI	RCATGY	3 cut(s)	1328, 1440, 1511
BstSCI	CCNGG	4 cut(s)	871, 921, 1864, 2797
BstSFI	CTRYAG	2 cut(s)	315, 3553
BstV1I	GCAGC	7 cut(s)	16, 563, 1315, 2082, 2204, 3300, 3368
BstV2I	GAAGAC	1 cut(s)	2711
BstX2I	RGATCY	4 cut(s)	68, 433, 1405, 3549
BstYI	RGATCY	4 cut(s)	68, 433, 1405, 3549
Bsu36I	CCTNAGG	1 cut(s)	346
BsuI	GTATCC	2 cut(s)	166, 681
BsuRI	GGCC	9 cut(s)	85, 195, 415, 876, 921, 1263, 1535, 1864, 2990
BtsIMutI	CAGTG	2 cut(s)	2566, 3583
Cac8I	GCNNGC	7 cut(s)	1326, 1476, 1633, 1810, 2728, 3178, 3570
CaiI	CAGNNNCTG	2 cut(s)	10, 1631
CciI	TCATGA	4 cut(s)	589, 1657, 2395, 3055
Cfr10I	RCCGGY	2 cut(s)	19, 415
Cfr13I	GGNCC	5 cut(s)	22, 919, 1534, 3451, 3530
CseI	GACGC	1 cut(s)	2668
Csp6I	GTAC	8 cut(s)	61, 446, 451, 521, 695, 1520, 2079, 2611
CspCI	CAANNNNNGTGG	2 cut(s)	2796, 2831
CviQI	GTAC	8 cut(s)	61, 446, 451, 521, 695, 1520, 2079, 2611
DraI	TTTAAA	3 cut(s)	657, 1768, 2070
DriI	GACNNNNNGTC	1 cut(s)	1935
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	4 cut(s)	121, 3002, 3019, 3270
Eam1105I	GACNNNNNGTC	1 cut(s)	1935
EarI	CTCTTC	4 cut(s)	121, 3002, 3019, 3270
Eco130I	CCWWGG	2 cut(s)	1143, 3573
Eco147I	AGGCCT	2 cut(s)	85, 876
Eco31I	GGTCTC	1 cut(s)	1301
Eco32I	GATATC	1 cut(s)	1366
Eco47I	GGWCC	3 cut(s)	22, 3451, 3530
Eco57I	CTGAAG	4 cut(s)	74, 639, 1981, 3546
Eco81I	CCTNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	1534
EcoRI	GAATTC	2 cut(s)	954, 2021
EcoRII	CCWGG	3 cut(s)	871, 921, 1864
EcoRV	GATATC	1 cut(s)	1366
EcoT14I	CCWWGG	2 cut(s)	1143, 3573
EcoT22I	ATGCAT	2 cut(s)	1399, 1575
ErhI	CCWWGG	2 cut(s)	1143, 3573
FalI	AAGNNNNNCTT	6 cut(s)	690, 722, 2750, 2782, 3356, 3388
FaqI	GGGAC	1 cut(s)	593
FauI	CCCGC	2 cut(s)	1630, 2731
FbaI	TGATCA	1 cut(s)	2974
Fnu4HI	GCNGC	9 cut(s)	5, 14, 17, 552, 1329, 2096, 2218, 3314, 3382
Fsp4HI	GCNGC	9 cut(s)	5, 14, 17, 552, 1329, 2096, 2218, 3314, 3382
FspBI	CTAG	7 cut(s)	878, 1481, 1548, 1913, 2411, 2606, 3191
GluI	GCNGC	9 cut(s)	5, 14, 17, 552, 1329, 2096, 2218, 3314, 3382
GsaI	CCCAGC	1 cut(s)	1877
GsuI	CTGGAG	4 cut(s)	1065, 1604, 1839, 2643
HaeIII	GGCC	9 cut(s)	85, 195, 415, 876, 921, 1263, 1535, 1864, 2990
HapII	CCGG	3 cut(s)	20, 416, 2798
HgaI	GACGC	1 cut(s)	2668
HincII	GTYRAC	1 cut(s)	2131
HindII	GTYRAC	1 cut(s)	2131
HindIII	AAGCTT	3 cut(s)	1993, 2123, 2759
HpaII	CCGG	3 cut(s)	20, 416, 2798
HphI	GGTGA	9 cut(s)	31, 118, 973, 1463, 1611, 2479, 3266, 3383, 3553
Hpy166II	GTNNAC	7 cut(s)	570, 695, 799, 2131, 2182, 3391, 3399
Hpy8I	GTNNAC	7 cut(s)	570, 695, 799, 2131, 2182, 3391, 3399
Hpy99I	CGWCG	2 cut(s)	68, 446
HpyCH4IV	ACGT	6 cut(s)	444, 646, 1639, 2495, 2515, 2594
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 13, 25, 1579, 1641, 2732, 3196
HpySE526I	ACGT	6 cut(s)	444, 646, 1639, 2495, 2515, 2594
KpnI	GGTACC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	2974
LguI	GCTCTTC	1 cut(s)	3270
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	7 cut(s)	16, 563, 1315, 2082, 2204, 3300, 3368
MaeI	CTAG	7 cut(s)	878, 1481, 1548, 1913, 2411, 2606, 3191
MaeII	ACGT	6 cut(s)	444, 646, 1639, 2495, 2515, 2594
MfeI	CAATTG	7 cut(s)	294, 404, 783, 807, 1233, 2316, 2923
MflI	RGATCY	4 cut(s)	68, 433, 1405, 3549
MlyI	GAGTC	5 cut(s)	695, 1625, 1956, 3421, 3455
MmeI	TCCRAC	8 cut(s)	465, 658, 703, 1011, 1917, 2043, 2089, 2909
Mph1103I	ATGCAT	2 cut(s)	1399, 1575
MroXI	GAANNNNTTC	3 cut(s)	1190, 1422, 1605
MslI	CAYNNNNRTG	4 cut(s)	1662, 2277, 3563, 3588
MspCI	CTTAAG	1 cut(s)	2159
MspI	CCGG	3 cut(s)	20, 416, 2798
MspR9I	CCNGG	4 cut(s)	873, 923, 1866, 2799
MunI	CAATTG	7 cut(s)	294, 404, 783, 807, 1233, 2316, 2923
Mva1269I	GAATGC	3 cut(s)	1192, 2391, 3029
MvaI	CCWGG	3 cut(s)	873, 923, 1866
MwoI	GCNNNNNNNGC	7 cut(s)	10, 13, 25, 1579, 1641, 2732, 3196
NciI	CCSGG	1 cut(s)	2799
NlaIV	GGNNCC	7 cut(s)	70, 435, 452, 920, 1853, 2796, 3369
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	5 cut(s)	1617, 2555, 2656, 3229, 3506
NsiI	ATGCAT	2 cut(s)	1399, 1575
NspI	RCATGY	3 cut(s)	1328, 1440, 1511
NspV	TTCGAA	2 cut(s)	2375, 3204
PaeI	GCATGC	1 cut(s)	1328
PagI	TCATGA	4 cut(s)	589, 1657, 2395, 3055
PceI	AGGCCT	2 cut(s)	85, 876
PciSI	GCTCTTC	1 cut(s)	3270
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 1945, 3317
PctI	GAATGC	3 cut(s)	1192, 2391, 3029
PdmI	GAANNNNTTC	3 cut(s)	1190, 1422, 1605
Pfl23II	CGTACG	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	2928
PkrI	GCNGC	9 cut(s)	6, 15, 18, 553, 1330, 2097, 2219, 3315, 3383
PleI	GAGTC	5 cut(s)	694, 1624, 1956, 3421, 3455
PpsI	GAGTC	5 cut(s)	694, 1624, 1956, 3421, 3455
PshBI	ATTAAT	2 cut(s)	228, 1803
PsiI	TTATAA	1 cut(s)	1796
Psp1406I	AACGTT	1 cut(s)	2594
Psp6I	CCWGG	3 cut(s)	871, 921, 1864
PspFI	CCCAGC	1 cut(s)	1873
PspGI	CCWGG	3 cut(s)	871, 921, 1864
PspLI	CGTACG	1 cut(s)	445
PspN4I	GGNNCC	7 cut(s)	70, 435, 452, 920, 1853, 2796, 3369
PspPI	GGNCC	5 cut(s)	22, 919, 1534, 3451, 3530
PsrI	GAACNNNNNNTAC	2 cut(s)	3272, 3304
PstNI	CAGNNNCTG	2 cut(s)	10, 1631
PsuI	RGATCY	4 cut(s)	68, 433, 1405, 3549
RsaI	GTAC	8 cut(s)	62, 447, 452, 522, 696, 1521, 2080, 2612
RsaNI	GTAC	8 cut(s)	61, 446, 451, 521, 695, 1520, 2079, 2611
RseI	CAYNNNNRTG	4 cut(s)	1662, 2277, 3563, 3588
SapI	GCTCTTC	1 cut(s)	3270
SatI	GCNGC	9 cut(s)	5, 14, 17, 552, 1329, 2096, 2218, 3314, 3382
Sau96I	GGNCC	5 cut(s)	22, 919, 1534, 3451, 3530
ScaI	AGTACT	2 cut(s)	1521, 2612
SchI	GAGTC	5 cut(s)	695, 1625, 1956, 3421, 3455
ScrFI	CCNGG	4 cut(s)	873, 923, 1866, 2799
SfcI	CTRYAG	2 cut(s)	315, 3553
SfuI	TTCGAA	2 cut(s)	2375, 3204
SinI	GGWCC	3 cut(s)	22, 3451, 3530
SmiI	ATTTAAAT	2 cut(s)	657, 2070
SmiMI	CAYNNNNRTG	4 cut(s)	1662, 2277, 3563, 3588
SmlI	CTYRAG	6 cut(s)	1750, 1964, 2159, 2228, 3438, 3463
SmoI	CTYRAG	6 cut(s)	1750, 1964, 2159, 2228, 3438, 3463
SpeI	ACTAGT	2 cut(s)	1547, 1912
SphI	GCATGC	1 cut(s)	1328
SseBI	AGGCCT	2 cut(s)	85, 876
SsiI	CCGC	5 cut(s)	14, 17, 1623, 2724, 3384
SspI	AATATT	3 cut(s)	1883, 2203, 2635
SspMI	CTAG	7 cut(s)	878, 1481, 1548, 1913, 2411, 2606, 3191
StuI	AGGCCT	2 cut(s)	85, 876
StyD4I	CCNGG	4 cut(s)	871, 921, 1864, 2797
StyI	CCWWGG	2 cut(s)	1143, 3573
SwaI	ATTTAAAT	2 cut(s)	657, 2070
TaiI	ACGT	6 cut(s)	447, 649, 1642, 2498, 2518, 2597
TaqI	TCGA	8 cut(s)	883, 1428, 1939, 2375, 2581, 3204, 3291, 3331
TaqII	GACCGA	1 cut(s)	953
TatI	WGTACW	4 cut(s)	694, 1519, 2078, 2610
TauI	GCSGC	2 cut(s)	16, 19
TscAI	CASTG	2 cut(s)	2566, 3590
TseFI	GTSAC	5 cut(s)	1617, 2555, 2656, 3229, 3506
TseI	GCWGC	7 cut(s)	4, 551, 1328, 2095, 2217, 3313, 3381
Tsp45I	GTSAC	5 cut(s)	1617, 2555, 2656, 3229, 3506
TspGWI	ACGGA	5 cut(s)	81, 110, 1398, 3276, 3344
TspRI	CASTG	2 cut(s)	2566, 3590
Van91I	CCANNNNNTGG	1 cut(s)	2928
Vha464I	CTTAAG	1 cut(s)	2159
VpaK11BI	GGWCC	3 cut(s)	22, 3451, 3530
VspI	ATTAAT	2 cut(s)	228, 1803
XceI	RCATGY	3 cut(s)	1328, 1440, 1511
XmnI	GAANNNNTTC	3 cut(s)	1190, 1422, 1605
XspI	CTAG	7 cut(s)	878, 1481, 1548, 1913, 2411, 2606, 3191
ZrmI	AGTACT	2 cut(s)	1521, 2612
Zsp2I	ATGCAT	2 cut(s)	1399, 1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.