Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

29371990 .. 29373765

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0297700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGGTAATGACCAAGATTGACTTGAGAATTGGTGGCATTTCCGCTGCTGACGACGCCGATCGAATCGAACAGCCTGCACCCCCACTGAGATTGAAGCGAGCTGAGAGTGATGCTTCAGTCAATGATGCTCCTGCTAAAGCTGAAACGTTTGCTCAGAGGTACTCTGAAATACTTGAGGACTTGAAGAAGGATCCTGAGAGTCACGGCGGTCCGCCTGATTGCATTCTACTTTGCAGACTTCGTGAGCAGATTCTTAGGGAGTTGGGGTTCAGAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCCATAACCCTGTTTGAGAATGTGGTGGATCTCAATGATGCTATTGAAGATGAAGGCAAGCGGGTAGAGAATCTGATTAGAGGGATATTTGCTGGAAACATATTTGATCTTGGTTCTGCTCAGTGCAAGGTCATTTATCTCAATGGACCTCAAAGATGCAACATATCTTTCTCTGAGAAGATTTTTAATTCCCTTGAAGATGCAGACCAGCTACTACAGATAACTGAGTTGATCATTGCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

186

Amino Acids

20.76

Weight (kDa)

4.79

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARMT1-like_dom	PF01937	32 - 176	2.5e-21	Damage-control phosphatase ARMT1-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 45, 210, 215, 376
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	3 cut(s)	188, 201, 351
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	5 cut(s)	97, 187, 286, 362, 512
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	104, 143, 526
AluI	AGCT	3 cut(s)	104, 143, 526
AlwI	GGATC	3 cut(s)	188, 201, 351
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	212, 461
AvaII	GGWCC	2 cut(s)	212, 461
BamHI	GGATCC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BclI	TGATCA	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	530
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	212, 461
BmgT120I	GGNCC	2 cut(s)	212, 461
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	5 cut(s)	103, 118, 343, 461, 505
BpuEI	CTTGAG	2 cut(s)	46, 197
BsaHI	GRCGYC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bse3DI	GCAATG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	7 cut(s)	80, 96, 170, 189, 449, 480, 531
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	225, 313
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	61, 193, 343, 421, 546
BspACI	CCGC	5 cut(s)	5, 45, 210, 215, 376
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	7 cut(s)	81, 97, 169, 190, 448, 481, 532
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	3 cut(s)	188, 201, 351
BsrDI	GCAATG	1 cut(s)	549
BssMI	GATC	5 cut(s)	61, 193, 343, 421, 546
BssNI	GRCGYC	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	78, 102, 374
BstDEI	CTNAG	8 cut(s)	89, 105, 156, 198, 257, 435, 489, 540
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	5 cut(s)	64, 196, 346, 424, 549
BstMBI	GATC	5 cut(s)	61, 193, 343, 421, 546
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	530
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	2 cut(s)	193, 343
BstYI	RGATCY	2 cut(s)	193, 343
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	86, 443
Cac8I	GCNNGC	3 cut(s)	78, 102, 374
Cfr13I	GGNCC	2 cut(s)	212, 461
CpoI	CGGWCCG	1 cut(s)	212
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	2 cut(s)	75, 110
CspI	CGGWCCG	1 cut(s)	212
CviJI	RGCY	5 cut(s)	76, 104, 143, 317, 526
CviKI_1	RGCY	5 cut(s)	76, 104, 143, 317, 526
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	8 cut(s)	89, 105, 156, 198, 257, 435, 489, 540
DpnI	GATC	5 cut(s)	63, 195, 345, 423, 548
DpnII	GATC	5 cut(s)	61, 193, 343, 421, 546
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	212, 461
Eco57I	CTGAAG	1 cut(s)	102
FaiI	YATR	4 cut(s)	281, 320, 416, 479
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FauI	CCCGC	1 cut(s)	369
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
HinfI	GANTC	4 cut(s)	66, 202, 253, 385
Hpy188I	TCNGA	5 cut(s)	159, 169, 275, 390, 490
Hpy188III	TCNNGA	3 cut(s)	197, 245, 286
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	184, 362
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	7 cut(s)	80, 225, 237, 311, 441, 474, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	8 cut(s)	89, 105, 156, 198, 257, 435, 489, 540
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	5 cut(s)	61, 193, 343, 421, 546
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	7 cut(s)	90, 147, 210, 231, 338, 393, 536
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	5 cut(s)	103, 118, 343, 461, 505
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	5 cut(s)	63, 195, 345, 423, 548
MboI	GATC	5 cut(s)	61, 193, 343, 421, 546
MboII	GAAGA	5 cut(s)	199, 314, 374, 505, 524
MflI	RGATCY	2 cut(s)	193, 343
MluCI	AATT	2 cut(s)	30, 502
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	153, 172, 389, 474
MseI	TTAA	1 cut(s)	501
MspA1I	CMGCKG	1 cut(s)	47
Mva1269I	GAATGC	2 cut(s)	225, 313
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	5 cut(s)	61, 193, 343, 421, 546
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	203
PctI	GAATGC	2 cut(s)	225, 313
PfeI	GAWTC	3 cut(s)	66, 253, 385
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	212, 461
PsuI	RGATCY	2 cut(s)	193, 343
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
Rsr2I	CGGWCCG	1 cut(s)	212
RsrII	CGGWCCG	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	5 cut(s)	61, 193, 343, 421, 546
Sau96I	GGNCC	2 cut(s)	212, 461
SchI	GAGTC	1 cut(s)	211
SetI	ASST	7 cut(s)	106, 145, 152, 164, 447, 466, 528
SfaNI	GCATC	5 cut(s)	103, 118, 343, 461, 505
SfcI	CTRYAG	1 cut(s)	530
SinI	GGWCC	2 cut(s)	212, 461
SmlI	CTYRAG	2 cut(s)	25, 176
SmoI	CTYRAG	2 cut(s)	25, 176
Sse9I	AATT	2 cut(s)	30, 502
SsiI	CCGC	5 cut(s)	5, 45, 210, 215, 376
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	64, 69
TasI	AATT	2 cut(s)	30, 502
TfiI	GAWTC	3 cut(s)	66, 253, 385
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	93, 443
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	315, 381
TspRI	CASTG	2 cut(s)	93, 443
VpaK11BI	GGWCC	2 cut(s)	212, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.