Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

539454 .. 540264

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000117.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggatagctcggaatgcgtgcgggtggccgtgaacatcaggccgttgattacctccgagcttttggtcggctgcacggattgcatttccgtcgttcccggtgaacctcaggtgcaaattgggactcatacattcacctacgattatgtatacggtagcacagcactgccttctagctcagtgtatgatgattgtgttgctccactggtggatgcgcttttccatggatacaatgctactgtgcttgcttacggccagacgggttctgggaagacgtatacaatgggcactaactattctggtgaaggaagcaccggcggaatcatacagaaagtgatggaaactattttcaaaagagtggagacaacgaaagataacacggagttcttgatcagggtatcgtttattgagatattcaaggaggaagtgtttgacttgcttgaggtccaagattgtgacactctgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

156

Amino Acids

17.08

Weight (kDa)

4.4

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	150, 278
AciI	CCGC	2 cut(s)	22, 318
AcoI	YGGCCR	2 cut(s)	27, 253
AgsI	TTSAA	2 cut(s)	352, 418
AluBI	AGCT	3 cut(s)	9, 61, 177
AluI	AGCT	3 cut(s)	9, 61, 177
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	3 cut(s)	27, 41, 253
ApeKI	GCWGC	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	3 cut(s)	113, 127, 314
AvaII	GGWCC	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	59
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	3 cut(s)	14, 28, 268
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	210
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	122, 192
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	29, 43, 255
BsiSI	CCGG	2 cut(s)	99, 315
BslFI	GGGAC	1 cut(s)	136
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	29, 43, 255
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	2 cut(s)	22, 318
BspANI	GGCC	3 cut(s)	29, 43, 255
BspCNI	CTCAG	2 cut(s)	121, 191
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	390
BssNAI	GTATAC	2 cut(s)	151, 279
BssT1I	CCWWGG	1 cut(s)	223
Bst1107I	GTATAC	2 cut(s)	151, 279
Bst4CI	ACNGT	2 cut(s)	155, 241
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	20, 246
BstDEI	CTNAG	2 cut(s)	108, 178
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 81
BstSCI	CCNGG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	278
BstZ17I	GTATAC	2 cut(s)	151, 279
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	29, 43, 255
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	164
BtsIMutI	CAGTG	3 cut(s)	164, 186, 203
Cac8I	GCNNGC	2 cut(s)	20, 246
CfoI	GCGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	445
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	7 cut(s)	9, 29, 43, 61, 72, 177, 255
CviKI_1	RGCY	7 cut(s)	9, 29, 43, 61, 72, 177, 255
DdeI	CTNAG	2 cut(s)	108, 178
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	27, 253
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	445
Eco81I	CCTNAGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	227
FaiI	YATR	7 cut(s)	129, 147, 151, 186, 225, 279, 326
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	223
FauI	CCCGC	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	390
FblI	GTMKAC	2 cut(s)	150, 278
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	29, 43, 255
HapII	CCGG	2 cut(s)	99, 315
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	124, 321
HpaII	CCGG	2 cut(s)	99, 315
HphI	GGTGA	3 cut(s)	113, 127, 314
Hpy166II	GTNNAC	4 cut(s)	34, 104, 151, 279
Hpy188I	TCNGA	3 cut(s)	13, 58, 465
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	4 cut(s)	34, 104, 151, 279
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	180, 299
HpyCH4III	ACNGT	2 cut(s)	155, 241
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	3 cut(s)	75, 84, 115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 81
HpyF3I	CTNAG	2 cut(s)	108, 178
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	215
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	25, 95, 112, 191, 252, 269, 285, 328, 379
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	1 cut(s)	283
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	64, 117, 415, 436
MspI	CCGG	2 cut(s)	99, 315
MspR9I	CCNGG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	15, 81
NciI	CCSGG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	455
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	445
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	9 cut(s)	11, 56, 63, 109, 114, 140, 179, 278, 447
SfaNI	GCATC	1 cut(s)	202
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	22, 318
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	155, 241
TaiI	ACGT	1 cut(s)	278
TasI	AATT	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	3 cut(s)	171, 186, 210
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	455
TspGWI	ACGGA	3 cut(s)	79, 92, 395
TspRI	CASTG	3 cut(s)	171, 186, 210
VpaK11BI	GGWCC	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	150, 278
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.