Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Forward (+)

10123924 .. 10132932

Gene Structure 9009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3648 bp

ATGTGTGTGGTAGCACAGCACCTGCCTTCTAGCTCAGTGTATGACGATTGTGTTGCTCCACTGGTGGATGCACTCTTCCATGGATACAATGCTACTGTGCTTGCTTACGGCCAGACGGGCTCGGGGAAGACGTATACATTGGGCACTAACTATTCTGGTGAAGGAAGCACTGGCGGAATCATACCGAAAGTGATGGAAACTATTTTCAAAAGAGTGGAGACAACGAAAGATAACACGGAGTTCTTGATCAGGGTATCGTTTATTGAGATATTCAAGGAGGAAGTGTTTGACTTGCTTGATCCAAATCCATCAACTCTCTCTAAAAATGAAGGGGCAGCTTCTACAAAGCCTATAGCAAGAGTGCCTATCCAAATTAGAGAAACAGTGAGTGGAGGGATAACACTTGCTTGTGTGACTGAGCCAGAGGTTAGGACAAAGGAAGATATGGGATCATATCTGGCTCGAGGTTCTTTAGCTCGTGCTACAGGGAGCACAAACATGAACAGTCAGTCAAGTCGCTCACATGCTATATTTACAATAACCATGAAGCAAAAGAAGATTTCTCACTCTCTGAATGGAGCAAATAATGATGCTATCGGTGATGACATACTATGCGCAAAACTCCATTTAGTTGACCTAGCAGGTTCTGAGCGGGCAAAACGAACAGGTGCAGATGGCATGCGCTTGAAAGAAGGCATTCATATCAACAAGGGTTTACTTGCTCTCGGAAATGTGATTAGTGCCCTGGGAGATGAGAAAAAGAGGAAAGAAGGCAGACATGTTCCCTACCGTGATAGCAAGTTAACTCGCTTGTTACAGGATTCACTAGGAGGAAACAGTAAGACTGTGATGATTGCTTGTGTTAGTCCAGCAGACACAAATGCAGAAGAGACCTTGAATACTTTAAAATATGCTAACCGTGCTCGCAACATCCAGAACAAGGCAGTGATCAATCGTGATCCGGTGGCTGCTCAGTTACAATTGATGCGCAGCCAGATTGAGCACTTGCAGACTGAACTTCTATTTTACCGTGGTGATGCTAGTGCACCATTTGAAGAACTGCAGATTCTTAAACACAAAGTGTCATTACTCGAAGCAAGCAACATGGAGCTGAGGCAGGAGCTTCAGGGACGCCGAATAACTTGTGAACACCTAACACAGCATGCTCTTGAAGCTCAGGTTGAAAAAGATAAACTGGCCATGAAAATTGAAGCCTTCCGAAATGGTAAATCTTGGGATGAGATTGACTCCAATCCAGTTCAGGAATATGACATGCTGAAAACTTATGTGTCGAAAATTCAAGAGTTAGAAGGGGAACTGTTATGCTTGAAAAACTCACAAAGCAGGAGACTTGTTGACTGTGTAGAGGCGGATGGTGGTGGCTTTCACTCAAACAACATATTATTCCCCTGTAATGATGAATATTCATCTGATTACGATACCAAAGCTGGGGATGTTTCTGATGTGATAGATGTAGAAAAAGAGCAAGAACATTCTTCTCTTCAAGAAATAGTGGATCGGGAGCTGAAAGAATTGGACAAAGCTCTCGAGCAAAAGGAGGCTGAAATGAAGCGGTTTACAAGTTCTGATACCTCGGTTCTTAAGCTGTATGAGAAGAAGGTTCATGAGTTAGAACATGAGAAGAAAGCCCTTCAGAGAGAGATTGAAGAGTTGAGACAAAATCTTTCAAATATCTCATCTACTTCTGGGGATGGTGCTCAAAAGTTAAAGGAGGATTATCTACACAAGTTGAACCTTCTTGAAGGACAGGTTTCTGAGCTGAAAAAGAAACAGGATGCTCAAGCCCAATTGCTGAGACAAAACCAAAAAAGCGATGAGGCTGCAAGGAGACTACAGGATGAAATTCAGAGAATAAAGACTCAAAAGGTTCAATTGCAACACAAGATCAAACAGAAGTCTGAGCAGTTTAGATTATGGAAAGCATCACGAGAAAAAGAAGTTCTTCAGCTTAAGAAAGAGGGAAGGAGGAACGAGTATGAGATGCATAAGCTGTTAGCTTTAAACCAGAGGCAAAAAATGGTTTTGCAACGAAAGACAGAAGAAGCTAATATGGCCACAAAAAAGCTAAAGGAGCTTTTAGAATCCAGAAAGACTTCTTCACGTGAAACTTCTGGTCATAATGCTCATGGTATTCAGGCTCTGATGCAGGCAATCGAACTTGAGCTTGAAGTCACAGTTAAGACACATGAAGTAAGATCTGAGTATGAGCGGCAAATTGAAGAGTGTGCTATGATGGCCAAGGAAAGAACCAAGATAATAGAAGAACAAAGTAATTTAAGAAATTCAAGGATTTTTGCACTTGAAAACATGCTTGCTACTTCTTCTAGCACCATGGTATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGCGGGGTTTCAATGGCAGCGGGCGTTGGAATCAAGTTCGGTCTCTTACAGATGCCAAAATTTTGATGAATCTATGGCATCACAATTGTCAGAAGCAGAAGAGCGCGAGCGGGGTTTCAATGGCAGGGGGCGTTGGAATCAAGTGCCTGTTACGAGATAAAGAAGTTGCATGCAGAGAGAAGGATTTGGAAATAAGAGATTTGAAGGAAAAAGTAGAAAGCCTCAGTAGTTTGCTCAGGAAGTTGGAGAATAAGAATGCTGAACTTATGCATCAGAGCTCAGCGTTGAAGAAATCTGAAAATGGACACGAGTATGATTTGCGCAAGCTAGATTCACGGACATCATTCATCTTGGAGGACGTGGATATATCTGACTCAGATGATGAGTGGATAGCCTCAGGAAAGCCAAAGACTAAAAAGAGAAAGTCCAAATATGGAAGTTCAAGTGAGGGATTCAATGCGCAAAGTACTAATGACTCTGGAGGCTTCAAGTTAGATAGTGCTGGTGAGGGGATAGTCAGTGTTGTGAAGAAAAGCGAGTCGGGCGTATGCTGCTCTTGTAGCAAGACTTCCTCCTGCAAAACAACTAAATGTCAATGTCGAACTACTGGAGGAGCCTGTGGGCCATCATGTGGTTGTGTGCCTGCTAAGTGTTCAAATAGAGAATCCAGCCTAGTTGAGGTACATGGGTCTCCAGAAGGAGAAACTGCTCAAGGAATTGGAAATGATGAAGGCACTGATGAAACAGAGAAGAGTCAGCATCTTGCTTCTCAGGGTGCCAGGTTACTTCAGAATGCATTAGTTGAGAGGCCTAGTGAAACAACTGATGATGGTGGACCAAGAAGGAAAGCTCTTTCAGAGATCGGAAATACGTTGGCCAAATCCAATGCACCGAAGCCTAACCAGAGAAAGAAATGGCGAAGAACCACAATCCAACTGGTTACAAATGCTCCTCCTCCCTCGCGGCCAGCAACTGCTGAAGCACCTCAAAGGCCAGATAAAGGGGCACCAGAGGTACCCATCCCTATGAAGCTTCCTCAAAGGCCAGAAAAAGGGGCACCAGAGGCACCTATCCCTATGAAGCTTCCTAGGGCAATCCGATCAGCTGCATCAAATGGTGGCAACTTATTTAGAGAGAGGAATTCTGATAAAGCAGATCAATCTGGTGTCAACAAGGAGGCCGGTGTTCCTGCTTCAAGAAGTCCTCTGCGGCAGAACAAAACATCAGATGAGAAGGAGAACTGTGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

1216

Amino Acids

135.03

Weight (kDa)

8.41

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	6 - 311	1.6e-99	Kinesin motor domain
Microtub_bd	PF16796	10 - 99	1.7e-14	Microtubule binding
KIF21A_4th	PF25764	485 - 660	6.7e-52	KIF21A-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	30
Acc16I	TGCGCA	4 cut(s)	616, 989, 2717, 2856
Acc36I	ACCTGC	2 cut(s)	30, 632
Acc65I	GGTACC	1 cut(s)	3409
AccB1I	GGYRCC	5 cut(s)	3170, 3400, 3409, 3451, 3460
AccB7I	CCANNNNNTGG	1 cut(s)	3026
AccBSI	CCGCTC	4 cut(s)	652, 2230, 2398, 2505
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	3 cut(s)	2394, 2501, 3358
AclWI	GGATC	4 cut(s)	293, 457, 953, 1524
AcoI	YGGCCR	6 cut(s)	109, 1197, 2073, 2256, 3270, 3359
AcsI	RAATTY	5 cut(s)	1296, 1863, 2302, 2454, 3535
AcuI	CTGAAG	5 cut(s)	1109, 1637, 1949, 3167, 3393
AcvI	CACGTG	1 cut(s)	2123
AcyI	GRCGYC	1 cut(s)	1132
AdeI	CACNNNGTG	1 cut(s)	1081
AfaI	GTAC	3 cut(s)	2863, 3078, 3411
AfiI	CCNNNNNNNGG	6 cut(s)	940, 1449, 3026, 3073, 3395, 3446
AflII	CTTAAG	2 cut(s)	1601, 1970
AflIII	ACRYGT	1 cut(s)	778
AjiI	CACGTC	1 cut(s)	2755
AjnI	CCWGG	2 cut(s)	744, 3173
Alw21I	GWGCWC	6 cut(s)	494, 925, 1005, 1048, 1720, 2675
Alw26I	GTCTC	8 cut(s)	212, 884, 1342, 1669, 1810, 1843, 2442, 3090
Alw44I	GTGCAC	1 cut(s)	1044
AlwI	GGATC	4 cut(s)	293, 457, 953, 1524
AlwNI	CAGNNNCTG	4 cut(s)	22, 647, 2161, 3368
Ama87I	CYCGRG	3 cut(s)	121, 462, 1547
ApaLI	GTGCAC	1 cut(s)	1044
ApeKI	GCWGC	7 cut(s)	335, 968, 990, 1841, 2412, 2946, 3500
ApoI	RAATTY	5 cut(s)	1296, 1863, 2302, 2454, 3535
Asp700I	GAANNNNTTC	3 cut(s)	696, 1962, 2113
Asp718I	GGTACC	1 cut(s)	3409
AspA2I	CCTAGG	1 cut(s)	3482
AspLEI	GCGC	7 cut(s)	617, 684, 990, 2394, 2501, 2718, 2857
AspS9I	GGNCC	2 cut(s)	3017, 3230
AsuHPI	GGTGA	4 cut(s)	170, 611, 1046, 2912
AvaI	CYCGRG	3 cut(s)	121, 462, 1547
AvaII	GGWCC	1 cut(s)	3230
AvrII	CCTAGG	1 cut(s)	3482
AxyI	CCTNAGG	1 cut(s)	2791
BaeGI	GKGCMC	5 cut(s)	146, 745, 1048, 3403, 3454
BaeI	ACNNNNGTAYC	6 cut(s)	1581, 1614, 2340, 2373, 3068, 3101
BalI	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
BanI	GGYRCC	5 cut(s)	3170, 3400, 3409, 3451, 3460
BanII	GRGCYC	2 cut(s)	122, 2675
BarI	GAAGNNNNNNTAC	2 cut(s)	2947, 2979
BauI	CACGAG	3 cut(s)	477, 1947, 2702
BbrPI	CACGTG	1 cut(s)	2123
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	6 cut(s)	494, 925, 1005, 1048, 1720, 2675
BbvCI	CCTCAGC	1 cut(s)	1112
BbvI	GCAGC	7 cut(s)	347, 955, 1002, 1828, 2424, 2933, 3487
BccI	CCATC	9 cut(s)	187, 316, 668, 1367, 1706, 2248, 3028, 3218, 3422
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 1823, 1857
BciT130I	CCWGG	2 cut(s)	746, 3175
BciVI	GTATCC	1 cut(s)	77
BclI	TGATCA	2 cut(s)	246, 948
BcoDI	GTCTC	8 cut(s)	212, 884, 1342, 1669, 1810, 1843, 2442, 3090
BfaI	CTAG	9 cut(s)	30, 638, 827, 1041, 2346, 2723, 3068, 3207, 3483
BfmI	CTRYAG	4 cut(s)	351, 483, 1061, 1853
BfrI	CTTAAG	2 cut(s)	1601, 1970
BfuAI	ACCTGC	2 cut(s)	30, 632
BfuI	GTATCC	1 cut(s)	77
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	2216
BlnI	CCTAGG	1 cut(s)	3482
BlpI	GCTNAGC	1 cut(s)	2674
BmcAI	AGTACT	1 cut(s)	2863
Bme1390I	CCNGG	2 cut(s)	746, 3175
Bme18I	GGWCC	1 cut(s)	3230
BmeT110I	CYCGRG	3 cut(s)	121, 462, 1547
BmgBI	CACGTC	1 cut(s)	2755
BmgT120I	GGNCC	2 cut(s)	3017, 3230
BmiI	GGNNCC	6 cut(s)	3010, 3172, 3402, 3411, 3453, 3462
BmrFI	CCNGG	2 cut(s)	746, 3175
BpiI	GAAGAC	1 cut(s)	134
BplI	GAGNNNNNCTC	2 cut(s)	1232, 1264
BpmI	CTGGAG	3 cut(s)	2895, 3024, 3072
Bpu10I	CCTNAGC	3 cut(s)	1112, 1176, 2630
Bpu1102I	GCTNAGC	1 cut(s)	2674
BpuEI	CTTGAG	3 cut(s)	1785, 2201, 3090
BsaAI	YACGTR	1 cut(s)	2123
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	1132
BsaI	GGTCTC	3 cut(s)	884, 2442, 3090
BsaJI	CCNNGG	8 cut(s)	79, 744, 745, 1030, 1593, 2259, 2352, 3482
BsaWI	WCCGGW	1 cut(s)	961
BsaXI	ACNNNNNCTCC	4 cut(s)	269, 299, 3328, 3358
Bsc4I	CCNNNNNNNGG	6 cut(s)	940, 1449, 3026, 3073, 3395, 3446
Bse118I	RCCGGY	1 cut(s)	3575
Bse1I	ACTGG	6 cut(s)	66, 175, 1200, 1256, 3007, 3336
Bse21I	CCTNAGG	1 cut(s)	2791
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	746, 3175
BseDI	CCNNGG	8 cut(s)	79, 744, 745, 1030, 1593, 2259, 2352, 3482
BseGI	GGATG	9 cut(s)	73, 930, 1243, 1378, 1459, 1717, 1801, 1864, 3414
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	6 cut(s)	940, 1449, 3026, 3073, 3395, 3446
BseNI	ACTGG	6 cut(s)	66, 175, 1200, 1256, 3007, 3336
BseRI	GAGGAG	3 cut(s)	3021, 3336, 3339
BseSI	GKGCMC	5 cut(s)	146, 745, 1048, 3403, 3454
BseXI	GCAGC	7 cut(s)	347, 955, 1002, 1828, 2424, 2933, 3487
BseYI	CCCAGC	1 cut(s)	1448
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	3 cut(s)	2394, 2501, 3358
BshNI	GGYRCC	5 cut(s)	3170, 3400, 3409, 3451, 3460
BsiHKAI	GWGCWC	6 cut(s)	494, 925, 1005, 1048, 1720, 2675
BsiHKCI	CYCGRG	3 cut(s)	121, 462, 1547
BsiSI	CCGG	2 cut(s)	962, 3576
BslFI	GGGAC	1 cut(s)	1143
BslI	CCNNNNNNNGG	6 cut(s)	940, 1449, 3026, 3073, 3395, 3446
BsmAI	GTCTC	8 cut(s)	212, 884, 1342, 1669, 1810, 1843, 2442, 3090
BsmFI	GGGAC	1 cut(s)	1143
BsmI	GAATGC	3 cut(s)	696, 2656, 3193
Bso31I	GGTCTC	3 cut(s)	884, 2442, 3090
BsoBI	CYCGRG	3 cut(s)	121, 462, 1547
Bsp1720I	GCTNAGC	1 cut(s)	2674
Bsp19I	CCATGG	2 cut(s)	79, 2352
BspFNI	CGCG	3 cut(s)	2394, 2501, 3358
BspHI	TCATGA	1 cut(s)	1624
BspLI	GGNNCC	6 cut(s)	3010, 3172, 3402, 3411, 3453, 3462
BspMAI	CTGCAG	1 cut(s)	1065
BspMI	ACCTGC	2 cut(s)	30, 632
BspPI	GGATC	4 cut(s)	293, 457, 953, 1524
BspQI	GCTCTTC	2 cut(s)	2382, 2489
BspT107I	GGYRCC	5 cut(s)	3170, 3400, 3409, 3451, 3460
BspTI	CTTAAG	2 cut(s)	1601, 1970
BspTNI	GGTCTC	3 cut(s)	884, 2442, 3090
BsrBI	CCGCTC	4 cut(s)	652, 2230, 2398, 2505
BsrFI	RCCGGY	1 cut(s)	3575
BsrI	ACTGG	6 cut(s)	66, 175, 1200, 1256, 3007, 3336
BssAI	RCCGGY	1 cut(s)	3575
BssECI	CCNNGG	8 cut(s)	79, 744, 745, 1030, 1593, 2259, 2352, 3482
BssNAI	GTATAC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	1132
BssSI	CACGAG	3 cut(s)	477, 1947, 2702
BssT1I	CCWWGG	4 cut(s)	79, 2259, 2352, 3482
Bst1107I	GTATAC	1 cut(s)	135
Bst2BI	CACGAG	3 cut(s)	477, 1947, 2702
Bst2UI	CCWGG	2 cut(s)	746, 3175
Bst6I	CTCTTC	8 cut(s)	80, 882, 1506, 1662, 2235, 2382, 2489, 3140
BstACI	GRCGYC	1 cut(s)	1132
BstAFI	CTTAAG	2 cut(s)	1601, 1970
BstBAI	YACGTR	1 cut(s)	2123
BstDSI	CCRYGG	3 cut(s)	79, 1030, 2352
BstENI	CCTNNNNNAGG	1 cut(s)	3071
BstF5I	GGATG	9 cut(s)	73, 930, 1243, 1378, 1459, 1717, 1801, 1864, 3414
BstFNI	CGCG	3 cut(s)	2394, 2501, 3358
BstHHI	GCGC	7 cut(s)	617, 684, 990, 2394, 2501, 2718, 2857
BstMAI	GTCTC	8 cut(s)	212, 884, 1342, 1669, 1810, 1843, 2442, 3090
BstNI	CCWGG	2 cut(s)	746, 3175
BstNSI	RCATGY	7 cut(s)	527, 682, 782, 1166, 1276, 2332, 2568
BstSCI	CCNGG	2 cut(s)	744, 3173
BstSFI	CTRYAG	4 cut(s)	351, 483, 1061, 1853
BstSLI	GKGCMC	5 cut(s)	146, 745, 1048, 3403, 3454
BstUI	CGCG	3 cut(s)	2394, 2501, 3358
BstV1I	GCAGC	7 cut(s)	347, 955, 1002, 1828, 2424, 2933, 3487
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	2216
BstYI	RGATCY	1 cut(s)	2216
BstZ17I	GTATAC	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	2791
BsuI	GTATCC	1 cut(s)	77
BtgI	CCRYGG	3 cut(s)	79, 1030, 2352
BtgZI	GCGATG	1 cut(s)	1848
BtrI	CACGTC	1 cut(s)	2755
BtsCI	GGATG	9 cut(s)	73, 930, 1243, 1378, 1459, 1717, 1801, 1864, 3414
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	7 cut(s)	42, 59, 168, 390, 951, 2920, 3129
BveI	ACCTGC	2 cut(s)	30, 632
CaiI	CAGNNNCTG	4 cut(s)	22, 647, 2161, 3368
CciI	TCATGA	1 cut(s)	1624
CfoI	GCGC	7 cut(s)	617, 684, 990, 2394, 2501, 2718, 2857
Cfr10I	RCCGGY	1 cut(s)	3575
Cfr13I	GGNCC	2 cut(s)	3017, 3230
CseI	GACGC	1 cut(s)	1140
Csp6I	GTAC	3 cut(s)	2862, 3077, 3410
CviQI	GTAC	3 cut(s)	2862, 3077, 3410
DraI	TTTAAA	2 cut(s)	906, 2022
DraIII	CACNNNGTG	1 cut(s)	1081
EaeI	YGGCCR	6 cut(s)	109, 1197, 2073, 2256, 3270, 3359
Eam1104I	CTCTTC	8 cut(s)	80, 882, 1506, 1662, 2235, 2382, 2489, 3140
EarI	CTCTTC	8 cut(s)	80, 882, 1506, 1662, 2235, 2382, 2489, 3140
EciI	GGCGGA	2 cut(s)	189, 1385
Ecl136II	GAGCTC	1 cut(s)	2673
Eco130I	CCWWGG	4 cut(s)	79, 2259, 2352, 3482
Eco147I	AGGCCT	1 cut(s)	3205
Eco24I	GRGCYC	2 cut(s)	122, 2675
Eco31I	GGTCTC	3 cut(s)	884, 2442, 3090
Eco47I	GGWCC	1 cut(s)	3230
Eco53kI	GAGCTC	1 cut(s)	2673
Eco57I	CTGAAG	5 cut(s)	1109, 1637, 1949, 3167, 3393
Eco72I	CACGTG	1 cut(s)	2123
Eco81I	CCTNAGG	1 cut(s)	2791
Eco88I	CYCGRG	3 cut(s)	121, 462, 1547
EcoICRI	GAGCTC	1 cut(s)	2673
EcoNI	CCTNNNNNAGG	1 cut(s)	3071
EcoRI	GAATTC	1 cut(s)	3535
EcoRII	CCWGG	2 cut(s)	744, 3173
EcoT14I	CCWWGG	4 cut(s)	79, 2259, 2352, 3482
EcoT22I	ATGCAT	3 cut(s)	2007, 2667, 3193
EcoT38I	GRGCYC	2 cut(s)	122, 2675
ErhI	CCWWGG	4 cut(s)	79, 2259, 2352, 3482
FalI	AAGNNNNNCTT	2 cut(s)	1947, 1979
FaqI	GGGAC	1 cut(s)	1143
FauI	CCCGC	4 cut(s)	645, 2391, 2408, 2498
FbaI	TGATCA	2 cut(s)	246, 948
FblI	GTMKAC	1 cut(s)	134
FokI	GGATG	9 cut(s)	80, 917, 1250, 1385, 1466, 1724, 1808, 1871, 3401
FriOI	GRGCYC	2 cut(s)	122, 2675
FspBI	CTAG	9 cut(s)	30, 638, 827, 1041, 2346, 2723, 3068, 3207, 3483
FspI	TGCGCA	4 cut(s)	616, 989, 2717, 2856
GlaI	GCGC	7 cut(s)	616, 683, 989, 2393, 2500, 2717, 2856
GsaI	CCCAGC	1 cut(s)	1452
GsuI	CTGGAG	3 cut(s)	2895, 3024, 3072
HapII	CCGG	2 cut(s)	962, 3576
HgaI	GACGC	1 cut(s)	1140
HhaI	GCGC	7 cut(s)	617, 684, 990, 2394, 2501, 2718, 2857
Hin1I	GRCGYC	1 cut(s)	1132
Hin6I	GCGC	7 cut(s)	615, 682, 988, 2392, 2499, 2716, 2855
HinP1I	GCGC	7 cut(s)	615, 682, 988, 2392, 2499, 2716, 2855
HincII	GTYRAC	4 cut(s)	634, 804, 1357, 3565
HindII	GTYRAC	4 cut(s)	634, 804, 1357, 3565
HindIII	AAGCTT	2 cut(s)	3425, 3476
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	2 cut(s)	962, 3576
HphI	GGTGA	4 cut(s)	170, 611, 1046, 2912
HpyCH4IV	ACGT	4 cut(s)	131, 2122, 2754, 3266
HpySE526I	ACGT	4 cut(s)	131, 2122, 2754, 3266
Hsp92I	GRCGYC	1 cut(s)	1132
HspAI	GCGC	7 cut(s)	615, 682, 988, 2392, 2499, 2716, 2855
KpnI	GGTACC	1 cut(s)	3413
Ksp22I	TGATCA	2 cut(s)	246, 948
KspAI	GTTAAC	1 cut(s)	804
LguI	GCTCTTC	2 cut(s)	2382, 2489
LmnI	GCTCC	9 cut(s)	61, 489, 578, 1108, 1120, 1522, 2092, 3008, 3349
Lsp1109I	GCAGC	7 cut(s)	347, 955, 1002, 1828, 2424, 2933, 3487
MaeI	CTAG	9 cut(s)	30, 638, 827, 1041, 2346, 2723, 3068, 3207, 3483
MaeII	ACGT	4 cut(s)	131, 2122, 2754, 3266
MaeIII	GTNAC	7 cut(s)	412, 813, 975, 2191, 2544, 3177, 3334
MbiI	CCGCTC	4 cut(s)	652, 2230, 2398, 2505
MfeI	CAATTG	5 cut(s)	980, 1808, 1892, 2372, 2479
MflI	RGATCY	1 cut(s)	2216
MlsI	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
MluNI	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
MlyI	GAGTC	6 cut(s)	1241, 1873, 2762, 2864, 2942, 3157
MmeI	TCCRAC	4 cut(s)	2402, 2509, 2619, 3352
Mox20I	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
Mph1103I	ATGCAT	3 cut(s)	2007, 2667, 3193
MroXI	GAANNNNTTC	3 cut(s)	696, 1962, 2113
MscI	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
MslI	CAYNNNNRTG	3 cut(s)	497, 2706, 3419
Msp20I	TGGCCA	4 cut(s)	1199, 2075, 2258, 3272
MspA1I	CMGCKG	2 cut(s)	2415, 3500
MspCI	CTTAAG	2 cut(s)	1601, 1970
MspI	CCGG	2 cut(s)	962, 3576
MspR9I	CCNGG	2 cut(s)	746, 3175
MunI	CAATTG	5 cut(s)	980, 1808, 1892, 2372, 2479
Mva1269I	GAATGC	3 cut(s)	696, 2656, 3193
MvaI	CCWGG	2 cut(s)	746, 3175
MvnI	CGCG	3 cut(s)	2394, 2501, 3358
NcoI	CCATGG	2 cut(s)	79, 2352
NlaIV	GGNNCC	6 cut(s)	3010, 3172, 3402, 3411, 3453, 3462
NmuCI	GTSAC	2 cut(s)	412, 2191
NsbI	TGCGCA	4 cut(s)	616, 989, 2717, 2856
NsiI	ATGCAT	3 cut(s)	2007, 2667, 3193
NspI	RCATGY	7 cut(s)	527, 682, 782, 1166, 1276, 2332, 2568
PaeI	GCATGC	3 cut(s)	682, 1166, 2568
PaeR7I	CTCGAG	2 cut(s)	462, 1547
PagI	TCATGA	1 cut(s)	1624
PaqCI	CACCTGC	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	3205
PciI	ACATGT	1 cut(s)	778
PciSI	GCTCTTC	2 cut(s)	2382, 2489
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PctI	GAATGC	3 cut(s)	696, 2656, 3193
PdmI	GAANNNNTTC	3 cut(s)	696, 1962, 2113
PflMI	CCANNNNNTGG	1 cut(s)	3026
PleI	GAGTC	6 cut(s)	1241, 1873, 2762, 2864, 2941, 3156
PmaCI	CACGTG	1 cut(s)	2123
PmlI	CACGTG	1 cut(s)	2123
PpsI	GAGTC	6 cut(s)	1241, 1873, 2762, 2864, 2941, 3156
Ppu21I	YACGTR	1 cut(s)	2123
PscI	ACATGT	1 cut(s)	778
Psp124BI	GAGCTC	1 cut(s)	2675
Psp6I	CCWGG	2 cut(s)	744, 3173
PspCI	CACGTG	1 cut(s)	2123
PspFI	CCCAGC	1 cut(s)	1448
PspGI	CCWGG	2 cut(s)	744, 3173
PspN4I	GGNNCC	6 cut(s)	3010, 3172, 3402, 3411, 3453, 3462
PspPI	GGNCC	2 cut(s)	3017, 3230
PspXI	VCTCGAGB	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	1065
PstNI	CAGNNNCTG	4 cut(s)	22, 647, 2161, 3368
PsuI	RGATCY	1 cut(s)	2216
PvuII	CAGCTG	1 cut(s)	3500
RsaI	GTAC	3 cut(s)	2863, 3078, 3411
RsaNI	GTAC	3 cut(s)	2862, 3077, 3410
RseI	CAYNNNNRTG	3 cut(s)	497, 2706, 3419
SacI	GAGCTC	1 cut(s)	2675
SapI	GCTCTTC	2 cut(s)	2382, 2489
Sau96I	GGNCC	2 cut(s)	3017, 3230
ScaI	AGTACT	1 cut(s)	2863
SchI	GAGTC	6 cut(s)	1241, 1873, 2762, 2864, 2942, 3157
ScrFI	CCNGG	2 cut(s)	746, 3175
SfcI	CTRYAG	4 cut(s)	351, 483, 1061, 1853
Sfr274I	CTCGAG	2 cut(s)	462, 1547
SinI	GGWCC	1 cut(s)	3230
SlaI	CTCGAG	2 cut(s)	462, 1547
SmiMI	CAYNNNNRTG	3 cut(s)	497, 2706, 3419
SmlI	CTYRAG	7 cut(s)	462, 1547, 1601, 1800, 1970, 2180, 3105
SmoI	CTYRAG	7 cut(s)	462, 1547, 1601, 1800, 1970, 2180, 3105
SphI	GCATGC	3 cut(s)	682, 1166, 2568
SseBI	AGGCCT	1 cut(s)	3205
SspI	AATATT	1 cut(s)	1424
SspMI	CTAG	9 cut(s)	30, 638, 827, 1041, 2346, 2723, 3068, 3207, 3483
SstI	GAGCTC	1 cut(s)	2675
StuI	AGGCCT	1 cut(s)	3205
StyD4I	CCNGG	2 cut(s)	744, 3173
StyI	CCWWGG	4 cut(s)	79, 2259, 2352, 3482
TaiI	ACGT	4 cut(s)	134, 2125, 2757, 3269
TaqI	TCGA	6 cut(s)	463, 1092, 1292, 1548, 2175, 2995
TaqII	GACCGA	1 cut(s)	2424
TatI	WGTACW	1 cut(s)	2861
TauI	GCSGC	3 cut(s)	2233, 3361, 3607
TscAI	CASTG	7 cut(s)	42, 66, 175, 390, 951, 2920, 3136
TseFI	GTSAC	2 cut(s)	412, 2191
TseI	GCWGC	7 cut(s)	335, 968, 990, 1841, 2412, 2946, 3500
Tsp45I	GTSAC	2 cut(s)	412, 2191
TspGWI	ACGGA	2 cut(s)	251, 2746
TspRI	CASTG	7 cut(s)	42, 66, 175, 390, 951, 2920, 3136
Van91I	CCANNNNNTGG	1 cut(s)	3026
Vha464I	CTTAAG	2 cut(s)	1601, 1970
VneI	GTGCAC	1 cut(s)	1044
VpaK11BI	GGWCC	1 cut(s)	3230
XagI	CCTNNNNNAGG	1 cut(s)	3071
XapI	RAATTY	5 cut(s)	1296, 1863, 2302, 2454, 3535
XceI	RCATGY	7 cut(s)	527, 682, 782, 1166, 1276, 2332, 2568
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2359, 3328
XhoI	CTCGAG	2 cut(s)	462, 1547
XmaJI	CCTAGG	1 cut(s)	3482
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	3 cut(s)	696, 1962, 2113
XspI	CTAG	9 cut(s)	30, 638, 827, 1041, 2346, 2723, 3068, 3207, 3483
ZrmI	AGTACT	1 cut(s)	2863
Zsp2I	ATGCAT	3 cut(s)	2007, 2667, 3193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.