Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001895

Physical Location & Seq

Genomic Coordinates Reverse (-)

8905185 .. 8906726

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGATCATATCTGGCTCGAGGTTCTTTAGCTCGTGCTACAGGGAGCACAAACATGAACAGTCAGTCAAGTCGCTCACATGCTATATTTACAATAACCATGGAGCAAAAGAAGATTTCTCACTGTCTGAATGGAGCAAATAATGATGATATTGGTGATGACATACTATGTGCAAAACTCCATTTAGTTGACCTAGCAGGTTCTGAGCGGGCAAAACGAACAGGTGCAGATGGCATGTGCTTGAAAGAAGGCATTCATATCAACAAGGGTTTACTTGCTCTCGGAAATGTGATTAGTGCCCTGGGAGATGAGAAAAAGAGGAAAGAAGGCGGACATGTTCCCTACTGTGATAGCAAGTTAACTCGCTTGTTACAGGATTCACTAGGAGGAAACAGTAAGACTGTGATGATTGCTTGTGTTAGTCCAGCTGACACAAATGCTGAAGAGAACTTGAATACTTTAAAATATGCTAACCGTGCTCGCAACATCCAGAACAAGGCAGTGATCAATCGTGATCCGGTGGCTGCTCAGTTACAATTGATGCGCAGCCAGATTGAGCACTTGCAGACTGAACTTCTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0008574 GO:0009506 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030054 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0055044 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

195

Amino Acids

21.0

Weight (kDa)

8.83

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	3 - 163	7.9e-58	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60930 AT5G60930 AT5G60930
fragaria_vesca	FvH4_5g35340
malus_domestica	MD08G1198000.v1.1 MD15G1385300.v1.1
prunus_persica	Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1 Prupe.1G532000_v2.0.a1
pyrus_communis	pycom08g17020 pycom15g07240 pycom15g34540
rosa_chinensis	RchiOBHm_Chr3g0494071 RchiOBHm_Chr7g0236541 RchiOBHm_Chr7g0236581 RchiOBHm_Chr7g0236691
rosa_laevigata	RLG00000000987 RLG00000000988 RLG00000001068 RLG00000001077 RLG00000001104
rosa_multiflora	Rmu_sc0002536.1_g000016 Rmu_sc0003720.1_g000010 Rmu_sc0011298.1_g000005 Rmu_ssc0000050.1_g000117
rosa_roxburghii	Rroxscaffold_3G00224960 Rroxscaffold_6G00429280
rosa_rugosa	Rorug07G0291900 Rorug07G0291900 Rorug07G0297600 Rorug07G0297700 Rorug07G0298200
rosa_samantha	Rh2CG391900 Rh7AG453300 Rh7AG453600 Rh7BG401100 Rh7BG418700 Rh7BG424500 Rh7CG471900 Rh7CG472100 Rh7DG438700 Rh7DG440900 Rh7DG441000
rosa_wichuraiana	Rw0G020690 Rw7G037620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	2 cut(s)	208, 330
AclWI	GGATC	2 cut(s)	13, 509
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	244, 454
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	2 cut(s)	32, 428
AluI	AGCT	2 cut(s)	32, 428
Alw21I	GWGCWC	3 cut(s)	50, 481, 561
AlwI	GGATC	2 cut(s)	13, 509
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	524, 546
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	50, 481, 561
BbvI	GCAGC	2 cut(s)	511, 558
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	302
BclI	TGATCA	1 cut(s)	504
BfaI	CTAG	2 cut(s)	194, 383
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	525, 547
BlsI	GCNGC	2 cut(s)	526, 548
Bme1390I	CCNGG	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	99, 300, 301
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	3 cut(s)	99, 300, 301
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	195, 542
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	511, 558
BsgI	GTGCAG	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	50, 481, 561
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	518
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	4 cut(s)	50, 301, 481, 561
Bsp143I	GATC	3 cut(s)	5, 504, 514
Bsp19I	CCATGG	1 cut(s)	99
BspACI	CCGC	2 cut(s)	208, 330
BspCNI	CTCAG	2 cut(s)	196, 541
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	13, 509
BsrBI	CCGCTC	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	99, 300, 301
BssMI	GATC	3 cut(s)	5, 504, 514
BssSI	CACGAG	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	6 cut(s)	62, 125, 347, 395, 403, 476
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	210, 481
BstDEI	CTNAG	2 cut(s)	204, 528
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	3 cut(s)	8, 507, 517
BstMBI	GATC	3 cut(s)	5, 504, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	3 cut(s)	83, 238, 338
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	511, 558
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	486
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	121, 507
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	210, 481
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	546
CviAII	CATG	5 cut(s)	55, 80, 100, 235, 335
CviJI	RGCY	5 cut(s)	17, 32, 428, 524, 549
CviKI_1	RGCY	5 cut(s)	17, 32, 428, 524, 549
DdeI	CTNAG	2 cut(s)	204, 528
DpnI	GATC	3 cut(s)	7, 506, 516
DpnII	GATC	3 cut(s)	5, 504, 514
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	58, 83, 103, 238, 338
FatI	CATG	5 cut(s)	54, 79, 99, 234, 334
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	525, 547
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	525, 547
FspBI	CTAG	2 cut(s)	194, 383
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	2 cut(s)	525, 547
HapII	CCGG	1 cut(s)	518
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	5 cut(s)	58, 83, 103, 238, 338
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	2 cut(s)	190, 360
HindII	GTYRAC	2 cut(s)	190, 360
HinfI	GANTC	1 cut(s)	377
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	518
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	3 cut(s)	190, 272, 360
Hpy188I	TCNGA	3 cut(s)	129, 205, 284
Hpy188III	TCNNGA	2 cut(s)	490, 512
Hpy8I	GTNNAC	3 cut(s)	190, 272, 360
HpyAV	CCTTC	2 cut(s)	242, 320
HpyCH4III	ACNGT	6 cut(s)	62, 125, 347, 395, 403, 476
HpyCH4V	TGCA	3 cut(s)	173, 227, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	2 cut(s)	204, 528
Hsp92II	CATG	5 cut(s)	58, 83, 103, 238, 338
HspAI	GCGC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	5, 504, 514
LmnI	GCTCC	3 cut(s)	45, 103, 134
Lsp1109I	GCAGC	2 cut(s)	511, 558
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	194, 383
MaeIII	GTNAC	2 cut(s)	369, 531
MalI	GATC	3 cut(s)	7, 506, 516
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	3 cut(s)	5, 504, 514
MboII	GAAGA	2 cut(s)	124, 455
MfeI	CAATTG	1 cut(s)	536
MhlI	GDGCHC	4 cut(s)	50, 301, 481, 561
MluCI	AATT	1 cut(s)	536
MnlI	CCTC	3 cut(s)	14, 312, 380
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	359, 461
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	428
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	302
MunI	CAATTG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	5, 504, 514
NlaIII	CATG	5 cut(s)	58, 83, 103, 238, 338
NsbI	TGCGCA	1 cut(s)	545
NspI	RCATGY	3 cut(s)	83, 238, 338
PaeR7I	CTCGAG	1 cut(s)	18
PasI	CCCWGGG	1 cut(s)	301
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	526, 548
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspXI	VCTCGAGB	1 cut(s)	18
PstNI	CAGNNNCTG	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	2 cut(s)	359, 461
SatI	GCNGC	2 cut(s)	525, 547
Sau3AI	GATC	3 cut(s)	5, 504, 514
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	4 cut(s)	50, 301, 481, 561
SetI	ASST	6 cut(s)	25, 34, 195, 202, 226, 430
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	18
SlaI	CTCGAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	536
SsiI	CCGC	2 cut(s)	208, 330
SspMI	CTAG	2 cut(s)	194, 383
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	6 cut(s)	62, 125, 347, 395, 403, 476
TaqI	TCGA	1 cut(s)	19
TasI	AATT	1 cut(s)	536
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	359, 461
Tru9I	TTAA	2 cut(s)	359, 461
TscAI	CASTG	2 cut(s)	128, 507
TseI	GCWGC	2 cut(s)	524, 546
TspDTI	ATGAA	2 cut(s)	71, 245
TspRI	CASTG	2 cut(s)	128, 507
XceI	RCATGY	3 cut(s)	83, 238, 338
XhoI	CTCGAG	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	194, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.