RchiOBHm_Chr4g0439061

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007553
Physical Location & Seq
Reverse (-)
61503216 .. 61504580
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40713

Sequence Viewer

Length: 915 bp
ATGGGAGTAGCCAGACGGGCTATGGTGATTTTGGTTCGTAGTTCTCGGTGGAAGATGCAGCGCCTCTGTCTCTTGTCTTCTCAGGAGAAATCGATGGCGACTTCAAGGAGATCGTGGTGGTGGGTTGGTGTTCTATGGCAGATCGCTAGACCATGGTTGAGGGTTCTTCAGTATCTGAGTCAGATCAGGCGATACTGGAATTGGCAGCGGTGGGCACGGTGGTTGGTGGTGTATAGCGCCGTGGTCTACAATTGTTGGCTTGCTCTGATATCTTCAGGCGATGTGTGGTGGTCTGCTATTAGAGGGGATGTGCAAAAGTTTTTCGTACTATGGCGGCGGCCTTGCCTTTGGGCAAGGCTTTGTAGTTATGTGATTATGGGCACCAACCTCACCATGTGTTGTTCTTCTTGGCCGGAGTCGGAGCTTTGGCTGTGGAAGATAAAGGTTGACGCCGGCATCGACTCCTACTATCTTTTACTTGTTTTTTGTTTTTTTAGGTTTTCGTCTTTAGTTTTTTGGCTAGGTCTTTTGAGTCTCTACTCTCTCGAGATAGGGTTTGGGATTATTAGTGGTATGGTTGTGTTATTATGGTGTCACTCTCAGAGACTATTGGAATTATTCTCGGTATCATCCTATGGTCGAGTGTTGAAGGGAGTCATTTTCTTCTTGAGATTGGCTATGAGGAGGTATGGAGACTTCTGGGTTGGTTTATCTGATGAGCTATTGTTATGGCGTTACTTCCGAGGACTATATGTGATATTATCGGTGGTTTTTGGTGGTCAATATGGCAGCGATTTATCCTTGTACGTGGTCTGGATACTTTGGGACATAATATGGAGGAGGATGACATGGCTGTTAGTATTGGCGGCGAGATTTTATCGTGACTCTCGGGATTGGTATTGTTATGTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

304

Amino Acids

36.56

Weight (kDa)

9.94

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 246
AciI CCGC 4 cut(s) 208, 334, 337, 866
AcoI YGGCCR 1 cut(s) 410
AcuI CTGAAG 2 cut(s) 152, 258
AcyI GRCGYC 1 cut(s) 450
AdeI CACNNNGTG 1 cut(s) 396
AfaI GTAC 2 cut(s) 327, 806
AgsI TTSAA 2 cut(s) 105, 649
AluBI AGCT 3 cut(s) 424, 721, 911
AluI AGCT 3 cut(s) 424, 721, 911
Alw26I GTCTC 4 cut(s) 74, 539, 598, 687
AlwNI CAGNNNCTG 1 cut(s) 175
Ama87I CYCGRG 2 cut(s) 545, 888
AoxI GGCC 2 cut(s) 338, 410
ApeKI GCWGC 3 cut(s) 58, 205, 789
AspLEI GCGC 2 cut(s) 63, 239
AsuHPI GGTGA 2 cut(s) 37, 382
AvaI CYCGRG 2 cut(s) 545, 888
BaeGI GKGCMC 2 cut(s) 217, 383
BanI GGYRCC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 680, 712
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 70, 217, 801
BccI CCATC 1 cut(s) 88
BceAI ACGGC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 810
BcoDI GTCTC 4 cut(s) 74, 539, 598, 687
BfaI CTAG 2 cut(s) 147, 521
BfoI RGCGCY 2 cut(s) 64, 240
BfuI GTATCC 1 cut(s) 810
BglI GCCNNNNNGGC 1 cut(s) 17
BisI GCNGC 6 cut(s) 59, 206, 335, 338, 790, 867
BlsI GCNGC 6 cut(s) 60, 207, 336, 339, 791, 868
BmeT110I CYCGRG 2 cut(s) 545, 888
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 2 cut(s) 45, 465
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 688
Bsa29I ATCGAT 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 808
BsaHI GRCGYC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 152, 240, 742
Bse118I RCCGGY 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 152, 240, 742
BseGI GGATG 3 cut(s) 313, 629, 849
BseMII CTCAG 3 cut(s) 95, 167, 614
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 697, 853
BseSI GKGCMC 2 cut(s) 217, 383
BseXI GCAGC 3 cut(s) 70, 217, 801
BshFI GGCC 2 cut(s) 340, 412
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 92
BsiHKCI CYCGRG 2 cut(s) 545, 888
BsiSI CCGG 2 cut(s) 413, 453
BslFI GGGAC 1 cut(s) 839
BsmAI GTCTC 4 cut(s) 74, 539, 598, 687
BsmFI GGGAC 1 cut(s) 839
BsnI GGCC 2 cut(s) 340, 412
BsoBI CYCGRG 2 cut(s) 545, 888
Bsp1286I GDGCHC 2 cut(s) 217, 383
Bsp143I GATC 3 cut(s) 110, 141, 183
Bsp19I CCATGG 1 cut(s) 152
BspACI CCGC 4 cut(s) 208, 334, 337, 866
BspANI GGCC 2 cut(s) 340, 412
BspCNI CTCAG 3 cut(s) 94, 168, 613
BspDI ATCGAT 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 382
BspT107I GGYRCC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 452
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 452
BssECI CCNNGG 3 cut(s) 152, 240, 742
BssMI GATC 3 cut(s) 110, 141, 183
BssNI GRCGYC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 808
BstC8I GCNNGC 2 cut(s) 261, 454
BstDEI CTNAG 3 cut(s) 81, 176, 600
BstDSI CCRYGG 2 cut(s) 152, 240
BstF5I GGATG 3 cut(s) 313, 629, 849
BstH2I RGCGCY 2 cut(s) 64, 240
BstHHI GCGC 2 cut(s) 63, 239
BstKTI GATC 3 cut(s) 113, 144, 186
BstMAI GTCTC 4 cut(s) 74, 539, 598, 687
BstMBI GATC 3 cut(s) 110, 141, 183
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstSLI GKGCMC 2 cut(s) 217, 383
BstV1I GCAGC 3 cut(s) 70, 217, 801
BstV2I GAAGAC 1 cut(s) 69
Bsu15I ATCGAT 1 cut(s) 92
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 2 cut(s) 340, 412
BsuTUI ATCGAT 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 152, 240
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 3 cut(s) 313, 629, 849
Cac8I GCNNGC 2 cut(s) 261, 454
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 2 cut(s) 63, 239
Cfr10I RCCGGY 1 cut(s) 452
ClaI ATCGAT 1 cut(s) 92
CseI GACGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 326, 805
CviAII CATG 3 cut(s) 153, 394, 849
CviQI GTAC 2 cut(s) 326, 805
DdeI CTNAG 3 cut(s) 81, 176, 600
DpnI GATC 3 cut(s) 112, 143, 185
DpnII GATC 3 cut(s) 110, 141, 183
DraIII CACNNNGTG 1 cut(s) 396
EaeI YGGCCR 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 152
Eco32I GATATC 1 cut(s) 270
Eco57I CTGAAG 2 cut(s) 152, 258
Eco88I CYCGRG 2 cut(s) 545, 888
EcoRV GATATC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 3 cut(s) 156, 397, 852
FaqI GGGAC 1 cut(s) 839
FatI CATG 3 cut(s) 152, 393, 848
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 6 cut(s) 59, 206, 335, 338, 790, 867
FokI GGATG 3 cut(s) 320, 616, 856
Fsp4HI GCNGC 6 cut(s) 59, 206, 335, 338, 790, 867
FspBI CTAG 2 cut(s) 147, 521
GlaI GCGC 2 cut(s) 62, 238
GluI GCNGC 6 cut(s) 59, 206, 335, 338, 790, 867
HaeII RGCGCY 2 cut(s) 64, 240
HaeIII GGCC 2 cut(s) 340, 412
HapII CCGG 2 cut(s) 413, 453
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 63, 239
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 3 cut(s) 156, 397, 852
Hin6I GCGC 2 cut(s) 61, 237
HinP1I GCGC 2 cut(s) 61, 237
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 6 cut(s) 178, 416, 461, 532, 654, 884
HpaII CCGG 2 cut(s) 413, 453
HphI GGTGA 2 cut(s) 37, 382
Hpy166II GTNNAC 2 cut(s) 247, 448
Hpy188I TCNGA 7 cut(s) 177, 183, 267, 421, 603, 715, 743
Hpy188III TCNNGA 7 cut(s) 83, 545, 547, 667, 814, 881, 890
Hpy8I GTNNAC 2 cut(s) 247, 448
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 2 cut(s) 58, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 3 cut(s) 81, 176, 600
HpySE526I ACGT 1 cut(s) 807
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 3 cut(s) 156, 397, 852
HspAI GCGC 2 cut(s) 61, 237
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
Kzo9I GATC 3 cut(s) 110, 141, 183
LmnI GCTCC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 25, 68, 172, 181, 261, 426, 466, 685, 799
Lsp1109I GCAGC 3 cut(s) 70, 217, 801
LweI GCATC 2 cut(s) 45, 465
MaeI CTAG 2 cut(s) 147, 521
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 593, 734, 881
MalI GATC 3 cut(s) 112, 143, 185
MboI GATC 3 cut(s) 110, 141, 183
MboII GAAGA 7 cut(s) 64, 69, 158, 264, 396, 448, 655
MfeI CAATTG 1 cut(s) 250
MhlI GDGCHC 2 cut(s) 217, 383
MluCI AATT 3 cut(s) 199, 250, 614
MlyI GAGTC 6 cut(s) 187, 425, 455, 541, 663, 878
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 9 cut(s) 74, 153, 296, 398, 675, 678, 737, 831, 834
MroNI GCCGGC 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 208
MspI CCGG 2 cut(s) 413, 453
MunI CAATTG 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 454
NcoI CCATGG 1 cut(s) 152
NdeII GATC 3 cut(s) 110, 141, 183
NgoMIV GCCGGC 1 cut(s) 452
NlaIII CATG 3 cut(s) 156, 397, 852
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 593, 881
PaeR7I CTCGAG 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdiI GCCGGC 1 cut(s) 454
PkrI GCNGC 6 cut(s) 60, 207, 336, 339, 791, 868
PleI GAGTC 6 cut(s) 186, 424, 455, 540, 662, 878
PpsI GAGTC 6 cut(s) 186, 424, 455, 540, 662, 878
Ppu21I YACGTR 1 cut(s) 808
PspN4I GGNNCC 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 2 cut(s) 327, 806
RsaNI GTAC 2 cut(s) 326, 805
SatI GCNGC 6 cut(s) 59, 206, 335, 338, 790, 867
Sau3AI GATC 3 cut(s) 110, 141, 183
SchI GAGTC 6 cut(s) 187, 425, 455, 541, 663, 878
SduI GDGCHC 2 cut(s) 217, 383
SetI ASST 9 cut(s) 390, 426, 447, 500, 526, 689, 723, 810, 913
SfaNI GCATC 2 cut(s) 45, 465
Sfr274I CTCGAG 1 cut(s) 545
SlaI CTCGAG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 545, 667
SmoI CTYRAG 2 cut(s) 545, 667
Sse9I AATT 3 cut(s) 199, 250, 614
SsiI CCGC 4 cut(s) 208, 334, 337, 866
SspMI CTAG 2 cut(s) 147, 521
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 92, 459, 546, 640
TasI AATT 3 cut(s) 199, 250, 614
TauI GCSGC 3 cut(s) 337, 340, 869
TseFI GTSAC 2 cut(s) 593, 881
TseI GCWGC 3 cut(s) 58, 205, 789
Tsp45I GTSAC 2 cut(s) 593, 881
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 147, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.