Rroxscaffold_6G00411730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0007553
Physical Location & Seq
Forward (+)
34339853 .. 34341920
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411730.1

Sequence Viewer

Length: 693 bp
ATGTTGGGGACCGGCTGGATTTTTGAGCGAATTGAGTCTCGATCGCTAGAGGGGATGTGCGGTTTCGTACAACAACCGCAGCCTTTTCTTAAGGGCACCAACCTCACCGTGTTCCTTTCTCTTTGGCCGGAGTCGGAGTATTTGATGTGGAAGAGGAAATTTGACAGCGCTAGGGTTTGGGGATCTTGGTGTTACGATTGTGCCATTGTTATGGTGTCACTCCCGTGGACTGATGGCTTTATTCTTGGTATCCTCTTATGGACGAGGTATTGGGGAAGAGCTCTTGCACGTGATCCGGCAATTTTGGGTTACGGTGTTGAAGAGAGTTTTTTTCTTCTTGAGATTGGCTATGAGGAGGAGCCTCAACTGGTCTTCCGCAAAAGCGTATGCCCGGTCCAAAGGCACGCCATCACTACGGCGTCGTCCGCCCGCCGAATTGTAGTTTGCATGGTGATGACGGTTTTTTCCGGGCGCTTGAAGGATATGATGGAGAAGGGCAGCGGCGGGGCGCCGGATGGATGGCGGGGTCGATGTCGCCTTGCCATAGGGAGGAGCACGATTGACCTAGTGGATGCTTTCGAGGTTGGGTCGCCGGGCGATGTGGGCTATGTCCCGTATGCACGCTTTGTGTGCCTTGTCCTGCCTAGCGAGGCGGCGAACTATTTGTTTGATCAAATTGACGCAACCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.93

Weight (kDa)

5.57

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 95, 508
AciI CCGC 9 cut(s) 60, 77, 376, 426, 430, 501, 504, 523, 653
AclWI GGATC 2 cut(s) 190, 287
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 158
AcvI CACGTG 1 cut(s) 290
AcyI GRCGYC 2 cut(s) 419, 509
AfaI GTAC 1 cut(s) 69
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 549
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 320, 478
AleI CACNNNNGTG 1 cut(s) 223
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
Alw21I GWGCWC 2 cut(s) 283, 557
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 190, 287
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 79, 498
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 3 cut(s) 170, 474, 511
AspS9I GGNCC 2 cut(s) 9, 394
AsuC2I CCSGG 3 cut(s) 392, 469, 594
AsuHPI GGTGA 2 cut(s) 97, 463
AvaII GGWCC 2 cut(s) 9, 394
BaeGI GKGCMC 1 cut(s) 98
BanI GGYRCC 2 cut(s) 95, 508
BanII GRGCYC 1 cut(s) 283
BbrPI CACGTG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 364
Bbv12I GWGCWC 2 cut(s) 283, 557
BbvI GCAGC 2 cut(s) 91, 510
BccI CCATC 5 cut(s) 227, 416, 481, 509, 513
BceAI ACGGC 1 cut(s) 432
BciVI GTATCC 1 cut(s) 260
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 3 cut(s) 392, 469, 594
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 5 cut(s) 47, 171, 566, 645, 691
BfoI RGCGCY 3 cut(s) 171, 475, 512
BfrI CTTAAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 4 cut(s) 80, 499, 502, 654
BlsI GCNGC 4 cut(s) 81, 500, 503, 655
Bme1390I CCNGG 3 cut(s) 392, 469, 594
Bme18I GGWCC 2 cut(s) 9, 394
BmgT120I GGNCC 2 cut(s) 9, 394
BmiI GGNNCC 4 cut(s) 10, 97, 360, 510
BmrFI CCNGG 3 cut(s) 392, 469, 594
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 3 cut(s) 392, 469, 594
BsaAI YACGTR 1 cut(s) 290
BsaHI GRCGYC 2 cut(s) 419, 509
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 3 cut(s) 122, 152, 671
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 4 cut(s) 60, 520, 524, 577
BseLI CCNNNNNNNGG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 3 cut(s) 368, 371, 565
BseSI GKGCMC 1 cut(s) 98
BseXI GCAGC 2 cut(s) 91, 510
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 127
BshNI GGYRCC 2 cut(s) 95, 508
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 2 cut(s) 283, 557
BsiSI CCGG 7 cut(s) 12, 128, 296, 392, 468, 512, 593
BslFI GGGAC 2 cut(s) 22, 596
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 2 cut(s) 22, 596
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 3 cut(s) 98, 283, 557
Bsp143I GATC 4 cut(s) 41, 182, 292, 670
BspACI CCGC 9 cut(s) 60, 77, 376, 426, 430, 501, 504, 523, 653
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 4 cut(s) 10, 97, 360, 510
BspPI GGATC 2 cut(s) 190, 287
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 2 cut(s) 95, 508
BspTI CTTAAG 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 4 cut(s) 41, 182, 292, 670
BssNI GRCGYC 2 cut(s) 419, 509
Bst4CI ACNGT 3 cut(s) 109, 314, 460
Bst6I CTCTTC 3 cut(s) 146, 271, 315
BstACI GRCGYC 2 cut(s) 419, 509
BstAFI CTTAAG 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 405, 430, 622
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 4 cut(s) 60, 520, 524, 577
BstH2I RGCGCY 3 cut(s) 171, 475, 512
BstHHI GCGC 3 cut(s) 170, 474, 511
BstKTI GATC 4 cut(s) 44, 185, 295, 673
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 4 cut(s) 41, 182, 292, 670
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 3 cut(s) 425, 603, 630
BstSCI CCNGG 3 cut(s) 390, 467, 592
BstSLI GKGCMC 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 91, 510
BstV2I GAAGAC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 1 cut(s) 182
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 4 cut(s) 60, 520, 524, 577
Cac8I GCNNGC 3 cut(s) 405, 430, 622
CfoI GCGC 3 cut(s) 170, 474, 511
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 9, 394
CseI GACGC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 448
CviJI RGCY 8 cut(s) 15, 82, 127, 237, 281, 348, 361, 606
CviKI_1 RGCY 8 cut(s) 15, 82, 127, 237, 281, 348, 361, 606
CviQI GTAC 1 cut(s) 68
DinI GGCGCC 1 cut(s) 510
DpnI GATC 4 cut(s) 43, 184, 294, 672
DpnII GATC 4 cut(s) 41, 182, 292, 670
EaeI YGGCCR 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 146, 271, 315
EarI CTCTTC 3 cut(s) 146, 271, 315
EciI GGCGGA 1 cut(s) 415
Ecl136II GAGCTC 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 9, 394
Eco47III AGCGCT 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 281
Eco72I CACGTG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 510
EheI GGCGCC 1 cut(s) 510
FaeI CATG 1 cut(s) 451
FaiI YATR 9 cut(s) 212, 259, 351, 388, 449, 485, 545, 609, 618
FaqI GGGAC 2 cut(s) 22, 596
FatI CATG 1 cut(s) 447
FauI CCCGC 3 cut(s) 437, 497, 516
FbaI TGATCA 1 cut(s) 670
Fnu4HI GCNGC 4 cut(s) 80, 499, 502, 654
FokI GGATG 4 cut(s) 67, 527, 531, 584
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 4 cut(s) 80, 499, 502, 654
FspBI CTAG 5 cut(s) 47, 171, 566, 645, 691
GlaI GCGC 3 cut(s) 169, 473, 510
GluI GCNGC 4 cut(s) 80, 499, 502, 654
HaeII RGCGCY 3 cut(s) 171, 475, 512
HaeIII GGCC 1 cut(s) 127
HapII CCGG 7 cut(s) 12, 128, 296, 392, 468, 512, 593
HgaI GACGC 1 cut(s) 408
HhaI GCGC 3 cut(s) 170, 474, 511
Hin1I GRCGYC 2 cut(s) 419, 509
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 3 cut(s) 168, 472, 509
HinP1I GCGC 3 cut(s) 168, 472, 509
HinfI GANTC 2 cut(s) 35, 131
HpaII CCGG 7 cut(s) 12, 128, 296, 392, 468, 512, 593
HphI GGTGA 2 cut(s) 97, 463
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 39, 338
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 472, 487
HpyCH4III ACNGT 3 cut(s) 109, 314, 460
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 287, 447, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 603, 630
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 2 cut(s) 419, 509
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 3 cut(s) 168, 472, 509
KasI GGCGCC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 4 cut(s) 41, 182, 292, 670
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 358, 552
LpnPI CCDG 9 cut(s) 25, 141, 309, 353, 405, 481, 525, 606, 653
Lsp1109I GCAGC 2 cut(s) 91, 510
LweI GCATC 1 cut(s) 562
MaeI CTAG 5 cut(s) 47, 171, 566, 645, 691
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 3 cut(s) 191, 216, 308
MalI GATC 4 cut(s) 43, 184, 294, 672
MboI GATC 4 cut(s) 41, 182, 292, 670
MboII GAAGA 5 cut(s) 163, 288, 326, 332, 364
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 3 cut(s) 98, 283, 557
MluCI AATT 5 cut(s) 30, 158, 300, 435, 675
Mly113I GGCGCC 1 cut(s) 509
MlyI GAGTC 2 cut(s) 44, 140
MmeI TCCRAC 1 cut(s) 114
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 3 cut(s) 209, 223, 452
MspA1I CMGCKG 1 cut(s) 501
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 7 cut(s) 12, 128, 296, 392, 468, 512, 593
MspR9I CCNGG 3 cut(s) 392, 469, 594
MwoI GCNNNNNNNGC 3 cut(s) 425, 603, 630
NarI GGCGCC 1 cut(s) 509
NciI CCSGG 3 cut(s) 392, 469, 594
NdeII GATC 4 cut(s) 41, 182, 292, 670
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 4 cut(s) 10, 97, 360, 510
NmuCI GTSAC 1 cut(s) 216
OliI CACNNNNGTG 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 271
PkrI GCNGC 4 cut(s) 81, 500, 503, 655
Ple19I CGATCG 1 cut(s) 44
PleI GAGTC 2 cut(s) 43, 139
PluTI GGCGCC 1 cut(s) 512
PmaCI CACGTG 1 cut(s) 290
PmlI CACGTG 1 cut(s) 290
PpsI GAGTC 2 cut(s) 43, 139
Ppu21I YACGTR 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 283
PspCI CACGTG 1 cut(s) 290
PspN4I GGNNCC 4 cut(s) 10, 97, 360, 510
PspPI GGNCC 2 cut(s) 9, 394
PsuI RGATCY 1 cut(s) 182
PvuI CGATCG 1 cut(s) 44
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 3 cut(s) 209, 223, 452
SacI GAGCTC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 4 cut(s) 80, 499, 502, 654
Sau3AI GATC 4 cut(s) 41, 182, 292, 670
Sau96I GGNCC 2 cut(s) 9, 394
SchI GAGTC 2 cut(s) 44, 140
ScrFI CCNGG 3 cut(s) 392, 469, 594
SduI GDGCHC 3 cut(s) 98, 283, 557
SetI ASST 7 cut(s) 105, 269, 283, 292, 567, 585, 689
SfaNI GCATC 1 cut(s) 562
SfoI GGCGCC 1 cut(s) 510
SinI GGWCC 2 cut(s) 9, 394
SmiMI CAYNNNNRTG 3 cut(s) 209, 223, 452
SmlI CTYRAG 2 cut(s) 89, 338
SmoI CTYRAG 2 cut(s) 89, 338
Sse9I AATT 5 cut(s) 30, 158, 300, 435, 675
SsiI CCGC 9 cut(s) 60, 77, 376, 426, 430, 501, 504, 523, 653
SspDI GGCGCC 1 cut(s) 508
SspMI CTAG 5 cut(s) 47, 171, 566, 645, 691
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 3 cut(s) 390, 467, 592
TaaI ACNGT 3 cut(s) 109, 314, 460
TaiI ACGT 1 cut(s) 292
TaqI TCGA 3 cut(s) 40, 529, 579
TasI AATT 5 cut(s) 30, 158, 300, 435, 675
TauI GCSGC 2 cut(s) 504, 656
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseFI GTSAC 1 cut(s) 216
TseI GCWGC 2 cut(s) 79, 498
Tsp45I GTSAC 1 cut(s) 216
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 2 cut(s) 9, 394
XapI RAATTY 1 cut(s) 158
XspI CTAG 5 cut(s) 47, 171, 566, 645, 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.