Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Reverse (-)

41079361 .. 41086581

Gene Structure 7221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG326200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAAGGTATTACTGATCATATCAGATGAGGGAGATGACTGTCCCATGACCAAGCTGCCAGAAATCAACTTTGAGGCTCTGTTTTGGTGCAAAACTCCTAGAGAAATGAAGCTTATTTTTAGGCTCATGGCTTTGCATGAGAAAGAGGAGAAAGGTGACCAGCGCATTTCACGGGCAAAGTTCTTCCTAATTGCTCTTGTTTGCAGTTTTACATGGTATGCTTTCCCAGGGTATCTCTTCACCACCCTCACAAGCATATCAAGGGTTTGTCGGATTGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0009628 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

94

Amino Acids

11.07

Weight (kDa)

7.65

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	43 - 92	9.7e-08	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	55, 112
AluI	AGCT	2 cut(s)	55, 112
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	167, 232
BbvI	GCAGC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	15
BfaI	CTAG	1 cut(s)	99
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	226, 227
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	226, 227
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	226, 227
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	228
BstPI	GGTNACC	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	165
CviAII	CATG	4 cut(s)	46, 127, 137, 213
CviJI	RGCY	5 cut(s)	55, 77, 112, 124, 131
CviKI_1	RGCY	5 cut(s)	55, 77, 112, 124, 131
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	155
EcoO65I	GGTNACC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	49, 130, 140, 216
FaiI	YATR	7 cut(s)	20, 47, 128, 138, 214, 219, 257
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	45, 126, 136, 212
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	49, 130, 140, 216
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	110
HphI	GGTGA	2 cut(s)	167, 232
Hpy188I	TCNGA	2 cut(s)	25, 273
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	90, 136, 204
Hsp92II	CATG	4 cut(s)	49, 130, 140, 216
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	72, 173, 213, 240
Lsp1109I	GCAGC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	175, 229
MluCI	AATT	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	4 cut(s)	22, 67, 139, 257
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	4 cut(s)	49, 130, 140, 216
NmuCI	GTSAC	1 cut(s)	155
PasI	CCCWGGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	226
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	4 cut(s)	9, 57, 114, 157
Sse9I	AATT	1 cut(s)	189
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	41
TasI	AATT	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	17, 122
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.