Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027765.1

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2700

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027765.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 707 bp

atgggtgtggccggacaggctatcgtgttgtcaggtggtggtaattggtgggagatatttcctttggttttattttcttctcaggcggatttagggaggtcgtggtggtggtccggtgttttgcggtggactggtgagtcatggttgggagttcacatgtttctgggatcggtctgttcaacccatgcgggtttgtacaaatccagttatggatttttggggattctctttaagggctggatttttgagataattagatatcggagacagcaagggtgggcacggtggttgccggtctatagcgctgtggtctataattgtgggctagttctagcgtctccaagcgttgagcggcgatctactattagagggaatgtgcgaaggggcttcgtacaacagctgcagccttgtcttctgccaaggtctattgattttgtggttatgggcaccaacctcactgcgctcctttctctttggtcggagttgaagaatttgatgtggaaggggaaatttgacgggtttccgctcctccaacaacagcagtcaacagcagcaggagcagccatggttctcaagaccgaactctgtaggttcagtggggcgaagatctaccctggtagaggcatcagatttatccggtctgattctcaggtgttcctctttgccaattcaaaatgcaagaggtacttccacaatcggttgaagcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

236

Amino Acids

26.77

Weight (kDa)

10.36

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	446
AccBSI	CCGCTC	2 cut(s)	352, 526
AciI	CCGC	5 cut(s)	86, 124, 188, 352, 524
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	490, 509
AfaI	GTAC	3 cut(s)	197, 393, 686
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	4 cut(s)	180, 487, 672, 703
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	259, 342
AlwI	GGATC	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	4 cut(s)	400, 403, 551, 560
ApoI	RAATTY	2 cut(s)	490, 509
AspLEI	GCGC	2 cut(s)	305, 463
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	111
BaeGI	GKGCMC	2 cut(s)	283, 449
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	4 cut(s)	387, 415, 563, 572
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	259, 342
BfaI	CTAG	2 cut(s)	326, 332
BfmI	CTRYAG	3 cut(s)	298, 401, 586
BfoI	RGCGCY	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	606
BisI	GCNGC	5 cut(s)	353, 401, 404, 552, 561
BlsI	GCNGC	5 cut(s)	354, 402, 405, 553, 562
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	1 cut(s)	633
BpiI	GAAGAC	1 cut(s)	404
BpuEI	CTTGAG	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	419, 564, 613
BsaWI	WCCGGW	2 cut(s)	113, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	136, 204
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	3 cut(s)	419, 564, 613
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	2 cut(s)	95, 662
BseNI	ACTGG	2 cut(s)	136, 204
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	2 cut(s)	283, 449
BseXI	GCAGC	4 cut(s)	387, 415, 563, 572
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	12, 114, 293, 637
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	259, 342
BsmBI	CGTCTC	1 cut(s)	342
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	283, 449
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	167, 356, 606
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	5 cut(s)	86, 124, 188, 352, 524
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	94, 661
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	405
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	446
BsrBI	CCGCTC	2 cut(s)	352, 526
BsrFI	RCCGGY	1 cut(s)	292
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	136, 204
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	3 cut(s)	419, 564, 613
BssMI	GATC	3 cut(s)	167, 356, 606
BssT1I	CCWWGG	2 cut(s)	419, 564
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	195
BstDEI	CTNAG	2 cut(s)	81, 648
BstDSI	CCRYGG	1 cut(s)	564
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	305, 463
BstKTI	GATC	3 cut(s)	170, 359, 609
BstMAI	GTCTC	2 cut(s)	259, 342
BstMBI	GATC	3 cut(s)	167, 356, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 557, 560
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	3 cut(s)	298, 401, 586
BstSLI	GKGCMC	2 cut(s)	283, 449
BstV1I	GCAGC	4 cut(s)	387, 415, 563, 572
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	564
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	456, 601
CfoI	GCGC	2 cut(s)	305, 463
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	3 cut(s)	196, 392, 685
CviAII	CATG	4 cut(s)	141, 157, 185, 565
CviJI	RGCY	9 cut(s)	11, 20, 237, 325, 387, 400, 406, 563, 706
CviKI_1	RGCY	9 cut(s)	11, 20, 237, 325, 387, 400, 406, 563, 706
CviQI	GTAC	3 cut(s)	196, 392, 685
DdeI	CTNAG	2 cut(s)	81, 648
DpnI	GATC	3 cut(s)	169, 358, 608
DpnII	GATC	3 cut(s)	167, 356, 606
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	419, 564
Eco32I	GATATC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	111
Eco47III	AGCGCT	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	1 cut(s)	260
EcoT14I	CCWWGG	2 cut(s)	419, 564
ErhI	CCWWGG	2 cut(s)	419, 564
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	4 cut(s)	144, 160, 188, 568
FaiI	YATR	8 cut(s)	142, 158, 186, 210, 300, 315, 443, 566
FalI	AAGNNNNNCTT	2 cut(s)	671, 703
FatI	CATG	4 cut(s)	140, 156, 184, 564
FauI	CCCGC	1 cut(s)	181
Fnu4HI	GCNGC	5 cut(s)	353, 401, 404, 552, 561
Fsp4HI	GCNGC	5 cut(s)	353, 401, 404, 552, 561
FspBI	CTAG	2 cut(s)	326, 332
GlaI	GCGC	2 cut(s)	304, 462
GluI	GCNGC	5 cut(s)	353, 401, 404, 552, 561
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	4 cut(s)	12, 114, 293, 637
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	2 cut(s)	305, 463
Hin1II	CATG	4 cut(s)	144, 160, 188, 568
Hin6I	GCGC	2 cut(s)	303, 461
HinP1I	GCGC	2 cut(s)	303, 461
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	3 cut(s)	137, 223, 644
HpaII	CCGG	4 cut(s)	12, 114, 293, 637
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	129, 154, 546
Hpy188I	TCNGA	4 cut(s)	264, 481, 629, 643
Hpy188III	TCNNGA	1 cut(s)	574
Hpy8I	GTNNAC	3 cut(s)	129, 154, 546
HpyAV	CCTTC	2 cut(s)	375, 496
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	403, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 557, 560
HpyF3I	CTNAG	2 cut(s)	81, 648
Hsp92II	CATG	4 cut(s)	144, 160, 188, 568
HspAI	GCGC	2 cut(s)	303, 461
Kzo9I	GATC	3 cut(s)	167, 356, 606
LmnI	GCTCC	3 cut(s)	468, 531, 557
Lsp1109I	GCAGC	4 cut(s)	387, 415, 563, 572
LweI	GCATC	1 cut(s)	633
MaeI	CTAG	2 cut(s)	326, 332
MalI	GATC	3 cut(s)	169, 358, 608
MbiI	CCGCTC	2 cut(s)	352, 526
MboI	GATC	3 cut(s)	167, 356, 606
MboII	GAAGA	4 cut(s)	69, 404, 499, 616
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	283, 449
MluCI	AATT	6 cut(s)	43, 252, 316, 490, 509, 667
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	459, 556
MnlI	CCTC	7 cut(s)	90, 362, 464, 539, 614, 668, 675
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	4 cut(s)	12, 114, 293, 637
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	3 cut(s)	17, 557, 560
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	167, 356, 606
NlaIII	CATG	4 cut(s)	144, 160, 188, 568
NlaIV	GGNNCC	1 cut(s)	448
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	223, 644
PkrI	GCNGC	5 cut(s)	354, 402, 405, 553, 562
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	197, 393, 686
RsaNI	GTAC	3 cut(s)	196, 392, 685
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	5 cut(s)	353, 401, 404, 552, 561
Sau3AI	GATC	3 cut(s)	167, 356, 606
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	2 cut(s)	283, 449
SetI	ASST	8 cut(s)	37, 101, 402, 425, 456, 593, 654, 686
SfaNI	GCATC	1 cut(s)	633
SfcI	CTRYAG	3 cut(s)	298, 401, 586
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	6 cut(s)	43, 252, 316, 490, 509, 667
SsiI	CCGC	5 cut(s)	86, 124, 188, 352, 524
SspMI	CTAG	2 cut(s)	326, 332
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	419, 564
TaaI	ACNGT	1 cut(s)	285
TaqII	GACCGA	2 cut(s)	160, 593
TasI	AATT	6 cut(s)	43, 252, 316, 490, 509, 667
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	223, 644
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	2 cut(s)	463, 601
TseI	GCWGC	4 cut(s)	400, 403, 551, 560
TspRI	CASTG	2 cut(s)	463, 601
VpaK11BI	GGWCC	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	618
XapI	RAATTY	2 cut(s)	490, 509
XceI	RCATGY	1 cut(s)	160
XspI	CTAG	2 cut(s)	326, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.