RchiOBHm_Chr5g0047911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007553
Physical Location & Seq
Forward (+)
44549779 .. 44552310
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32576

Sequence Viewer

Length: 351 bp
ATGGCTAAAACAGAGTCTCTCGTCGCGCTTGTCCGGCGGCACCCTCACGACGATGACGGCTCCTTGCTTAGTCGGAGTGAGATGGGTGTAGCTGGATGGGCTATGGTGATCTTGGTTCGTAGTTCTCAGTGGAAGATGCGGCGCCTCTATATCTTGTCTTCTCAGGCGAAATCGATGGCTTCTTCAAGGAGATCGTGGTGGTGGGTTGGTGTTCCATGGCAGATCACTAGACCATGGTTGAGGGTTCTTCAGTATCTGAGTCAGATCAGGTCAATCTCTACGATTTTGGGTGGATCTGGGTTTGGATTATTGGGGACAATTTTCAAGGGCTGGATTAATTTGCGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.33

Weight (kDa)

11.81

Isoelectric Point (pI)

80.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 39, 141
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 37, 139
AclWI GGATC 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 142
AgsI TTSAA 2 cut(s) 186, 325
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 301
AlwNI CAGNNNCTG 1 cut(s) 256
AseI ATTAAT 1 cut(s) 336
AspLEI GCGC 2 cut(s) 28, 144
AsuHPI GGTGA 1 cut(s) 118
BanI GGYRCC 2 cut(s) 39, 141
BbsI GAAGAC 1 cut(s) 150
BccI CCATC 3 cut(s) 76, 90, 169
BceAI ACGGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 2 cut(s) 38, 140
BlsI GCNGC 2 cut(s) 39, 141
BmiI GGNNCC 3 cut(s) 41, 61, 143
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 215, 233
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 215, 233
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 140, 176, 248
Bsh1236I CGCG 1 cut(s) 26
BshNI GGYRCC 2 cut(s) 39, 141
BshVI ATCGAT 1 cut(s) 173
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 328
Bsp143I GATC 5 cut(s) 108, 191, 222, 264, 293
Bsp19I CCATGG 2 cut(s) 215, 233
BspACI CCGC 2 cut(s) 37, 139
BspCNI CTCAG 3 cut(s) 139, 175, 249
BspDI ATCGAT 1 cut(s) 173
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 3 cut(s) 41, 61, 143
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 2 cut(s) 39, 141
BssECI CCNNGG 2 cut(s) 215, 233
BssMI GATC 5 cut(s) 108, 191, 222, 264, 293
BssNI GRCGYC 1 cut(s) 142
BssT1I CCWWGG 2 cut(s) 215, 233
BstACI GRCGYC 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 68, 126, 162, 257
BstDSI CCRYGG 2 cut(s) 215, 233
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 28, 144
BstKTI GATC 5 cut(s) 111, 194, 225, 267, 296
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 5 cut(s) 108, 191, 222, 264, 293
BstMWI GCNNNNNNNGC 2 cut(s) 34, 98
BstUI CGCG 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 173
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 2 cut(s) 215, 233
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 134
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 2 cut(s) 28, 144
ClaI ATCGAT 1 cut(s) 173
CviAII CATG 2 cut(s) 216, 234
CviJI RGCY 6 cut(s) 5, 60, 92, 101, 179, 330
CviKI_1 RGCY 6 cut(s) 5, 60, 92, 101, 179, 330
DdeI CTNAG 4 cut(s) 68, 126, 162, 257
DinI GGCGCC 1 cut(s) 143
DpnI GATC 5 cut(s) 110, 193, 224, 266, 295
DpnII GATC 5 cut(s) 108, 191, 222, 264, 293
Eco130I CCWWGG 2 cut(s) 215, 233
Eco57I CTGAAG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 215, 233
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
ErhI CCWWGG 2 cut(s) 215, 233
FaeI CATG 2 cut(s) 219, 237
FaiI YATR 4 cut(s) 104, 150, 217, 235
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 215, 233
Fnu4HI GCNGC 2 cut(s) 38, 140
FokI GGATG 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 38, 140
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 27, 143
GluI GCNGC 2 cut(s) 38, 140
HaeII RGCGCY 1 cut(s) 145
HapII CCGG 1 cut(s) 34
HhaI GCGC 2 cut(s) 28, 144
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 2 cut(s) 219, 237
Hin6I GCGC 2 cut(s) 26, 142
HinP1I GCGC 2 cut(s) 26, 142
HinfI GANTC 2 cut(s) 14, 259
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 75, 258, 264
Hpy188III TCNNGA 1 cut(s) 47
Hpy99I CGWCG 2 cut(s) 26, 53
HpyAV CCTTC 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 98
HpyF3I CTNAG 4 cut(s) 68, 126, 162, 257
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 2 cut(s) 219, 237
HspAI GCGC 2 cut(s) 26, 142
KasI GGCGCC 1 cut(s) 141
Kzo9I GATC 5 cut(s) 108, 191, 222, 264, 293
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 47, 78, 149, 253, 282, 316
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 228
MalI GATC 5 cut(s) 110, 193, 224, 266, 295
MboI GATC 5 cut(s) 108, 191, 222, 264, 293
MboII GAAGA 4 cut(s) 145, 150, 174, 239
MflI RGATCY 1 cut(s) 293
MluCI AATT 2 cut(s) 318, 337
Mly113I GGCGCC 1 cut(s) 142
MlyI GAGTC 2 cut(s) 23, 268
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 3 cut(s) 54, 155, 234
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 34, 98
NarI GGCGCC 1 cut(s) 142
NcoI CCATGG 2 cut(s) 215, 233
NdeII GATC 5 cut(s) 108, 191, 222, 264, 293
NlaIII CATG 2 cut(s) 219, 237
NlaIV GGNNCC 3 cut(s) 41, 61, 143
PkrI GCNGC 2 cut(s) 39, 141
PleI GAGTC 2 cut(s) 22, 267
PluTI GGCGCC 1 cut(s) 145
PpsI GAGTC 2 cut(s) 22, 267
PshBI ATTAAT 1 cut(s) 336
PspN4I GGNNCC 3 cut(s) 41, 61, 143
PstNI CAGNNNCTG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 38, 140
Sau3AI GATC 5 cut(s) 108, 191, 222, 264, 293
SchI GAGTC 2 cut(s) 23, 268
SetI ASST 3 cut(s) 94, 272, 350
SfaNI GCATC 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 2 cut(s) 318, 337
SsiI CCGC 2 cut(s) 37, 139
SspDI GGCGCC 1 cut(s) 141
SspMI CTAG 1 cut(s) 228
StyI CCWWGG 2 cut(s) 215, 233
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 318, 337
TauI GCSGC 2 cut(s) 40, 142
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 134
TspRI CASTG 1 cut(s) 134
VspI ATTAAT 1 cut(s) 336
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.