Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Forward (+)

48977633 .. 48978145

Gene Structure 513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00033810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGCGCGATTTTGGTTGTCCGGATTTAGGAGTGCAAGATCGATCCGACTCGTTCGGCTCCCGTCCGATTCATGCGGACTCCAAGTTCGGTTGGATAGTGATGTGGGGAGCGTTTGGCGTGAGGGACCACTTATCGGTTTGCTCTACCTTAGATCGGAGTTGGGAAGCCGGTGGTGGTGGCTCGGCGAGGAAGTTGGAGGCGCTACTAGTGGTGGGCCGCAAGGGTGGTGCGGGCGAGATGCGAGTGGCGCTGCTGGCCTGCCGCAATCTTTCACTTGGGCTTGGTAGTGGTGACATGGGATCTGTCCCGTATGCACACTCGGTGTGCCTTGTCCCGTCTAGCGAGGCGGCGAAGTGTTTGTTTGATCAAATGGACGCAACCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

13.54

Weight (kDa)

6.26

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	5 cut(s)	77, 220, 233, 265, 350
AclWI	GGATC	2 cut(s)	39, 310
AdeI	CACNNNGTG	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	29, 136, 156
AhlI	ACTAGT	1 cut(s)	208
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AlwI	GGATC	2 cut(s)	39, 310
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	217, 258
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspLEI	GCGC	3 cut(s)	9, 205, 253
AspS9I	GGNCC	2 cut(s)	127, 217
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	240
BclI	TGATCA	1 cut(s)	367
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	3 cut(s)	209, 342, 388
BfoI	RGCGCY	2 cut(s)	206, 254
BisI	GCNGC	4 cut(s)	220, 254, 265, 351
BlsI	GCNGC	4 cut(s)	221, 255, 266, 352
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	127, 217
BmiI	GGNNCC	2 cut(s)	61, 128
BmsI	GCATC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 136, 156
Bse118I	RCCGGY	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	43
BseLI	CCNNNNNNNGG	3 cut(s)	29, 136, 156
BseXI	GCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	219, 260
BshVI	ATCGAT	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	23, 171
BslFI	GGGAC	3 cut(s)	140, 293, 320
BslI	CCNNNNNNNGG	3 cut(s)	29, 136, 156
BsmFI	GGGAC	3 cut(s)	140, 293, 320
BsnI	GGCC	2 cut(s)	219, 260
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	40, 44, 154, 302, 367
BspACI	CCGC	5 cut(s)	77, 220, 233, 265, 350
BspANI	GGCC	2 cut(s)	219, 260
BspDI	ATCGAT	1 cut(s)	43
BspEI	TCCGGA	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	2 cut(s)	61, 128
BspPI	GGATC	2 cut(s)	39, 310
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	5 cut(s)	40, 44, 154, 302, 367
BstC8I	GCNNGC	3 cut(s)	235, 258, 262
BstDEI	CTNAG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	2 cut(s)	206, 254
BstHHI	GCGC	3 cut(s)	9, 205, 253
BstKTI	GATC	5 cut(s)	43, 47, 157, 305, 370
BstMBI	GATC	5 cut(s)	40, 44, 154, 302, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 257
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
Bsu15I	ATCGAT	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	219, 260
BsuTUI	ATCGAT	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	235, 258, 262
CfoI	GCGC	3 cut(s)	9, 205, 253
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	127, 217
ClaI	ATCGAT	1 cut(s)	43
CviAII	CATG	2 cut(s)	74, 298
CviJI	RGCY	6 cut(s)	60, 170, 183, 219, 260, 283
CviKI_1	RGCY	6 cut(s)	60, 170, 183, 219, 260, 283
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	5 cut(s)	42, 46, 156, 304, 369
DpnII	GATC	5 cut(s)	40, 44, 154, 302, 367
DraIII	CACNNNGTG	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	127
FaeI	CATG	2 cut(s)	77, 301
FaiI	YATR	3 cut(s)	75, 299, 315
FaqI	GGGAC	3 cut(s)	140, 293, 320
FatI	CATG	2 cut(s)	73, 297
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	4 cut(s)	220, 254, 265, 351
Fsp4HI	GCNGC	4 cut(s)	220, 254, 265, 351
FspBI	CTAG	3 cut(s)	209, 342, 388
GlaI	GCGC	3 cut(s)	8, 204, 252
GluI	GCNGC	4 cut(s)	220, 254, 265, 351
HaeII	RGCGCY	2 cut(s)	206, 254
HaeIII	GGCC	2 cut(s)	219, 260
HapII	CCGG	2 cut(s)	23, 171
HhaI	GCGC	3 cut(s)	9, 205, 253
Hin1II	CATG	2 cut(s)	77, 301
Hin6I	GCGC	3 cut(s)	7, 203, 251
HinP1I	GCGC	3 cut(s)	7, 203, 251
HinfI	GANTC	3 cut(s)	50, 70, 80
HpaII	CCGG	2 cut(s)	23, 171
HphI	GGTGA	1 cut(s)	305
Hpy188I	TCNGA	3 cut(s)	49, 69, 159
Hpy188III	TCNNGA	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	37, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 257
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	77, 301
HspAI	GCGC	3 cut(s)	7, 203, 251
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	40, 44, 154, 302, 367
LmnI	GCTCC	2 cut(s)	65, 110
LpnPI	CCDG	4 cut(s)	36, 184, 242, 274
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	3 cut(s)	209, 342, 388
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	5 cut(s)	42, 46, 156, 304, 369
MboI	GATC	5 cut(s)	40, 44, 154, 302, 367
MflI	RGATCY	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	44, 74
MmeI	TCCRAC	3 cut(s)	72, 74, 177
MnlI	CCTC	4 cut(s)	117, 183, 193, 340
MroI	TCCGGA	1 cut(s)	22
MspI	CCGG	2 cut(s)	23, 171
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	2 cut(s)	250, 257
NdeII	GATC	5 cut(s)	40, 44, 154, 302, 367
NlaIII	CATG	2 cut(s)	77, 301
NlaIV	GGNNCC	2 cut(s)	61, 128
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	221, 255, 266, 352
PleI	GAGTC	2 cut(s)	44, 74
PpsI	GAGTC	2 cut(s)	44, 74
PspN4I	GGNNCC	2 cut(s)	61, 128
PspPI	GGNCC	2 cut(s)	127, 217
PsuI	RGATCY	1 cut(s)	302
SatI	GCNGC	4 cut(s)	220, 254, 265, 351
Sau3AI	GATC	5 cut(s)	40, 44, 154, 302, 367
Sau96I	GGNCC	2 cut(s)	127, 217
SchI	GAGTC	2 cut(s)	44, 74
SetI	ASST	2 cut(s)	152, 386
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	208
SsiI	CCGC	5 cut(s)	77, 220, 233, 265, 350
SspMI	CTAG	3 cut(s)	209, 342, 388
TaqI	TCGA	1 cut(s)	43
TauI	GCSGC	3 cut(s)	222, 267, 353
TfiI	GAWTC	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	127
XspI	CTAG	3 cut(s)	209, 342, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.