Rroxscaffold_1G00048710

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
68780178 .. 68780620
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048710.1

Sequence Viewer

Length: 384 bp
ATGGGGTTGGTGGTGGAGGTTGGTCTTTGGCTACGGTGTGTCATTGGAGTTGAGCTTACCGGAGCTGTGCATCCCGAGCCTACCGCGGTTGAACCCGAGTTGCTTGGAGCTGGCATCATGGATGAGGAAGGTTTAATTAGTCCTTCCTCAATTGAGCATTTGAGCGAGGGTTTGGTGTCTTGGTTTCGTGGTTGTGCCATTGTTATGGTGTCAATTCTAGGGACTATTTGTTTTAATTTCGATGTTTTCTTGTTGGCAATGCAATGGGGAGACACCCCTACACATATACCGACGGTTTTGGTATATGGTGTCGGAAGGGGATTGTTTCTTATTGAGGTTGGCTATAAGGATGTGTCGGGACTCCTAGAAAAGGTTGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.6

Weight (kDa)

4.34

Isoelectric Point (pI)

26.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 2 cut(s) 84, 86
AfiI CCNNNNNNNGG 1 cut(s) 370
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 3 cut(s) 55, 65, 110
AluI AGCT 3 cut(s) 55, 65, 110
Alw26I GTCTC 1 cut(s) 264
Ama87I CYCGRG 2 cut(s) 74, 95
AvaI CYCGRG 2 cut(s) 74, 95
BccI CCATC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 2 cut(s) 218, 365
BmeT110I CYCGRG 2 cut(s) 74, 95
BmsI GCATC 2 cut(s) 79, 123
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 264, 269
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 3 cut(s) 70, 127, 355
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 2 cut(s) 264, 269
Bsh1236I CGCG 1 cut(s) 86
BsiHKCI CYCGRG 2 cut(s) 74, 95
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 2 cut(s) 235, 372
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 235, 372
BsoBI CYCGRG 2 cut(s) 74, 95
BspACI CCGC 2 cut(s) 84, 86
BspFNI CGCG 1 cut(s) 86
BsrDI GCAATG 2 cut(s) 264, 269
BssECI CCNNGG 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 36, 295
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 84
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 3 cut(s) 70, 127, 355
BstFNI CGCG 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstUI CGCG 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 70, 127, 355
Cac8I GCNNGC 1 cut(s) 112
Cfr42I CCGCGG 1 cut(s) 87
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 31, 55, 65, 79, 110, 342
CviKI_1 RGCY 6 cut(s) 31, 55, 65, 79, 110, 342
Eco88I CYCGRG 2 cut(s) 74, 95
EcoNI CCTNNNNNAGG 1 cut(s) 368
FaeI CATG 1 cut(s) 121
FaiI YATR 7 cut(s) 119, 206, 285, 287, 304, 306, 345
FaqI GGGAC 2 cut(s) 235, 372
FatI CATG 1 cut(s) 117
FokI GGATG 3 cut(s) 57, 134, 362
FspBI CTAG 2 cut(s) 218, 365
HapII CCGG 1 cut(s) 60
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 360
HpaII CCGG 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 314
Hpy188III TCNNGA 2 cut(s) 74, 357
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 122, 153, 309
HpyCH4III ACNGT 2 cut(s) 36, 295
HpyCH4V TGCA 2 cut(s) 70, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92II CATG 1 cut(s) 121
KspI CCGCGG 1 cut(s) 87
LmnI GCTCC 2 cut(s) 62, 107
LpnPI CCDG 2 cut(s) 73, 96
LweI GCATC 2 cut(s) 79, 123
MaeI CTAG 2 cut(s) 218, 365
MfeI CAATTG 1 cut(s) 150
MluCI AATT 4 cut(s) 135, 150, 213, 235
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 292
MnlI CCTC 5 cut(s) 10, 118, 157, 160, 328
MseI TTAA 3 cut(s) 134, 234, 382
MslI CAYNNNNRTG 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 60
MunI CAATTG 1 cut(s) 150
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 76
NlaIII CATG 1 cut(s) 121
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 203
SacII CCGCGG 1 cut(s) 87
SaqAI TTAA 3 cut(s) 134, 234, 382
SchI GAGTC 1 cut(s) 354
SetI ASST 7 cut(s) 21, 57, 67, 112, 133, 339, 375
SfaNI GCATC 2 cut(s) 79, 123
Sfr303I CCGCGG 1 cut(s) 87
SgrBI CCGCGG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 4 cut(s) 135, 150, 213, 235
SsiI CCGC 2 cut(s) 84, 86
SspMI CTAG 2 cut(s) 218, 365
TaaI ACNGT 2 cut(s) 36, 295
TaqI TCGA 1 cut(s) 240
TasI AATT 4 cut(s) 135, 150, 213, 235
Tru1I TTAA 3 cut(s) 134, 234, 382
Tru9I TTAA 3 cut(s) 134, 234, 382
XagI CCTNNNNNAGG 1 cut(s) 368
XspI CTAG 2 cut(s) 218, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.