Rh2AG165500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007553
Physical Location & Seq
Forward (+)
15581015 .. 15584610
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG165500.1

Sequence Viewer

Length: 468 bp
ATGGGATTTCTGTCGGCATATGTGAGGATTCATATCAAACTGGTGATTCAGATGATTCGACTCCAAGCAAAGCAGCAGCTCACGATGATCATATGCAGAGGTCTTCTCCGGCTGCTCTTTTTCAGGAAGGAAACTACTCGGTATTGGAGAAGTTCTATGTACATCGGCAAGGATACAAGAACAGATTTTCAAAATCCAGGACTAGTCCACGACAAGCTGCTTCCCTGCATTGTTCTTTCAGGCATTTCTCTGCCCTTTGGATTCCTAACAAGCTTTGAAATGTGCATTAATTGTGGCTTGCTGCTTTGGCACACTTCTGGAATAATGAAGGTATTACTGATTATATCAGATGAGGGAGATGACTGTCCCATGACCAAGCTGCCAGAAATCAACTTTGAGGCTCTGTTTTGGTGCAAAACTCCTAGAGAAATGAAGCTTATTTTTAGGCTCATGTTGTTATTACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

18.12

Weight (kDa)

9.44

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 2 cut(s) 191, 278
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 5 cut(s) 79, 217, 273, 379, 436
AluI AGCT 5 cut(s) 79, 217, 273, 379, 436
ApeKI GCWGC 6 cut(s) 73, 76, 112, 217, 301, 379
AseI ATTAAT 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 6 cut(s) 85, 88, 99, 204, 288, 366
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 87
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 2 cut(s) 203, 423
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 6 cut(s) 74, 77, 113, 218, 302, 380
BlsI GCNGC 6 cut(s) 75, 78, 114, 219, 303, 381
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BsaBI GATNNNNATC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 1 cut(s) 198
BseJI GATNNNNATC 1 cut(s) 32
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 6 cut(s) 85, 88, 99, 204, 288, 366
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 1 cut(s) 87
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 299
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 6 cut(s) 85, 88, 99, 204, 288, 366
BstV2I GAAGAC 1 cut(s) 95
BsuI GTATCC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 370, 451
CviJI RGCY 9 cut(s) 79, 112, 217, 273, 297, 379, 401, 436, 448
CviKI_1 RGCY 9 cut(s) 79, 112, 217, 273, 297, 379, 401, 436, 448
CviQI GTAC 1 cut(s) 160
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 196
FaeI CATG 2 cut(s) 373, 454
FaiI YATR 9 cut(s) 19, 21, 33, 92, 94, 158, 344, 371, 452
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 369, 450
FauNDI CATATG 2 cut(s) 19, 92
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 6 cut(s) 74, 77, 113, 218, 302, 380
Fsp4HI GCNGC 6 cut(s) 74, 77, 113, 218, 302, 380
FspBI CTAG 2 cut(s) 203, 423
GluI GCNGC 6 cut(s) 74, 77, 113, 218, 302, 380
HapII CCGG 1 cut(s) 109
Hin1II CATG 2 cut(s) 373, 454
HindIII AAGCTT 2 cut(s) 271, 434
HinfI GANTC 5 cut(s) 28, 46, 55, 60, 261
HpaII CCGG 1 cut(s) 109
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 51, 349
Hpy188III TCNNGA 3 cut(s) 82, 124, 318
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 121, 322
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 96, 228, 285, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 2 cut(s) 373, 454
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 9 cut(s) 26, 109, 122, 183, 210, 225, 238, 303, 396
Lsp1109I GCAGC 6 cut(s) 85, 88, 99, 204, 288, 366
MaeI CTAG 2 cut(s) 203, 423
MaeII ACGT 1 cut(s) 463
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 95
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 4 cut(s) 18, 92, 346, 391
MseI TTAA 1 cut(s) 288
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 307
NdeI CATATG 2 cut(s) 19, 92
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 373, 454
PfeI GAWTC 4 cut(s) 28, 46, 55, 261
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 6 cut(s) 75, 78, 114, 219, 303, 381
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 6 cut(s) 74, 77, 113, 218, 302, 380
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 198
SetI ASST 8 cut(s) 81, 103, 219, 275, 333, 381, 438, 466
SpeI ACTAGT 1 cut(s) 202
Sse9I AATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 203, 423
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 466
TaqI TCGA 1 cut(s) 58
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 4 cut(s) 28, 46, 55, 261
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 6 cut(s) 73, 76, 112, 217, 301, 379
TspDTI ATGAA 3 cut(s) 20, 341, 446
VspI ATTAAT 1 cut(s) 288
XspI CTAG 2 cut(s) 203, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.