Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Reverse (-)

11029966 .. 11036111

Gene Structure 6146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00170630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTAGTGGCAAGAGTCAGAAGTCAGAACAGAATGAACTTGAACCACTATGAGCCATACGTATTAATGCAGAAATGCAGGGAATTTCAATCACCATCATCGTCCATCACCACCATTCTATATTCTGTGGAACCTTTCCTTCTTTTTGAAGAAGAGCTTTTGCATACAACCCCTAATAGAATAGAGGCTGCCTCTTCGCTTGTCCGGCGGCACCCTCACGACGACTACGGCTCCTTGCCTAGGAGGCGTGAGATGGGTGTGGCCGGACGGGCTATAGTGTTGTCGAGTGGTGGTTGTCGGTGGGAGATGCTTCCTTTGGTTTTCTTTTCTTCTCGGGCGGATTTAGGGAGGTCGTGGTGGTGGTCCGGTGTTCTACGGCGGACCGGTGAGTCATGGTTGGGAGTTCACCGGCTTCGGGTTCGGCCTGTTCAACCTATCTTGGTTTGTACAGATCCGTGTCCGGAATGTTGGGGACCGGCTGGATTTTTGAGCGAATTGAGTGGCGGTCTGCTGGAGGGGATGTGCAAAGGGGTTTCGTACAACAGCTGCAGCCTTTTCTTATGGGCACCAACCTCACTGCATTCCTTTCTCTTTGGCCGATCGAGGTATTGGGGAAGAGCTCTTGCACGTGATCCGGCAATTTTGGGTTACGATGTTGAAGAGAGTTTTTTTCTTCTTGAGATTGGCTATGAGGAGAAAGAAACCAAGGACAGTAGGAGGAAAAATGTAAAAGTCCGGGGCATTTTGGGAATTCCACTACGAACCAGGCAATGGCAAGCCGTAATTAAGGTAACGGACGTGGGTTTCTGGTACATTCACGTGCCAGCGTTTCCAAACGTGGCAGGCTCTCCAGTAAAAGCTGTTGGACAAGCGGCTCTAACCCTCGTCCTTTTGCGCCAGGTCCCTATCACCACAGCCGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.81

Weight (kDa)

9.45

Isoelectric Point (pI)

62.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	388
AccB1I	GGYRCC	2 cut(s)	210, 565
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	5 cut(s)	208, 338, 379, 504, 872
AclWI	GGATC	2 cut(s)	446, 626
AcoI	YGGCCR	2 cut(s)	261, 595
AcsI	RAATTY	2 cut(s)	83, 750
AcvI	CACGTG	2 cut(s)	629, 820
AfaI	GTAC	3 cut(s)	448, 539, 812
AfiI	CCNNNNNNNGG	3 cut(s)	240, 415, 771
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	5 cut(s)	43, 89, 149, 431, 659
AjiI	CACGTC	1 cut(s)	799
AjnI	CCWGG	2 cut(s)	764, 897
AluBI	AGCT	4 cut(s)	157, 546, 620, 860
AluI	AGCT	4 cut(s)	157, 546, 620, 860
Alw21I	GWGCWC	1 cut(s)	622
AlwI	GGATC	2 cut(s)	446, 626
Ama87I	CYCGRG	1 cut(s)	333
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	3 cut(s)	261, 422, 595
ApeKI	GCWGC	3 cut(s)	188, 546, 549
ApoI	RAATTY	2 cut(s)	83, 750
AseI	ATTAAT	1 cut(s)	65
AsiGI	ACCGGT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	897
AspS9I	GGNCC	4 cut(s)	363, 381, 473, 901
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	5 cut(s)	84, 100, 398, 398, 901
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	4 cut(s)	363, 381, 473, 901
AvrII	CCTAGG	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	210, 565
BanII	GRGCYC	1 cut(s)	622
BbrPI	CACGTG	2 cut(s)	629, 820
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	3 cut(s)	175, 533, 561
BccI	CCATC	3 cut(s)	103, 113, 247
BceAI	ACGGC	4 cut(s)	244, 392, 764, 902
BciT130I	CCWGG	2 cut(s)	766, 899
BcnI	CCSGG	1 cut(s)	737
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	273, 547
BglI	GCCNNNNNGGC	2 cut(s)	244, 269
BisI	GCNGC	5 cut(s)	189, 209, 547, 550, 873
BlnI	CCTAGG	1 cut(s)	239
BlsI	GCNGC	5 cut(s)	190, 210, 548, 551, 874
Bme1390I	CCNGG	3 cut(s)	737, 766, 899
Bme18I	GGWCC	4 cut(s)	363, 381, 473, 901
BmeT110I	CYCGRG	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	799
BmgT120I	GGNCC	4 cut(s)	363, 381, 473, 901
BmiI	GGNNCC	6 cut(s)	132, 212, 232, 474, 567, 903
BmrFI	CCNGG	3 cut(s)	737, 766, 899
BmsI	GCATC	1 cut(s)	297
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	2 cut(s)	533, 834
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	737
BsaAI	YACGTR	3 cut(s)	61, 629, 820
BsaJI	CCNNGG	3 cut(s)	239, 705, 736
BsaWI	WCCGGW	3 cut(s)	365, 383, 460
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 506, 536
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 415, 771
Bse118I	RCCGGY	3 cut(s)	383, 408, 475
Bse1I	ACTGG	1 cut(s)	851
Bse3DI	GCAATG	1 cut(s)	776
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	766, 899
BseDI	CCNNGG	3 cut(s)	239, 705, 736
BseGI	GGATG	1 cut(s)	525
BseLI	CCNNNNNNNGG	3 cut(s)	240, 415, 771
BseMI	GCAATG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	851
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	568
BseXI	GCAGC	3 cut(s)	175, 533, 561
Bsh1285I	CGRYCG	1 cut(s)	602
BshFI	GGCC	3 cut(s)	263, 424, 597
BshNI	GGYRCC	2 cut(s)	210, 565
BshTI	ACCGGT	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	9 cut(s)	205, 264, 366, 384, 409, 461, 476, 635, 736
BslFI	GGGAC	2 cut(s)	486, 887
BslI	CCNNNNNNNGG	3 cut(s)	240, 415, 771
BsmFI	GGGAC	2 cut(s)	486, 887
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	263, 424, 597
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	568, 622
Bsp13I	TCCGGA	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	451, 599, 631
BspACI	CCGC	5 cut(s)	208, 338, 379, 504, 872
BspANI	GGCC	3 cut(s)	263, 424, 597
BspEI	TCCGGA	1 cut(s)	460
BspLI	GGNNCC	6 cut(s)	132, 212, 232, 474, 567, 903
BspMAI	CTGCAG	1 cut(s)	551
BspPI	GGATC	2 cut(s)	446, 626
BspQI	GCTCTTC	2 cut(s)	147, 610
BspT107I	GGYRCC	2 cut(s)	210, 565
BsrDI	GCAATG	1 cut(s)	776
BsrFI	RCCGGY	3 cut(s)	383, 408, 475
BsrGI	TGTACA	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	851
BssAI	RCCGGY	3 cut(s)	383, 408, 475
BssECI	CCNNGG	3 cut(s)	239, 705, 736
BssMI	GATC	3 cut(s)	451, 599, 631
BssT1I	CCWWGG	2 cut(s)	239, 705
Bst2UI	CCWGG	2 cut(s)	766, 899
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	4 cut(s)	147, 199, 610, 654
BstAUI	TGTACA	1 cut(s)	446
BstBAI	YACGTR	3 cut(s)	61, 629, 820
BstC8I	GCNNGC	3 cut(s)	777, 825, 844
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	897
BstKTI	GATC	3 cut(s)	454, 602, 634
BstMBI	GATC	3 cut(s)	451, 599, 631
BstMCI	CGRYCG	1 cut(s)	602
BstMWI	GCNNNNNNNGC	3 cut(s)	205, 244, 269
BstNI	CCWGG	2 cut(s)	766, 899
BstSCI	CCNGG	3 cut(s)	735, 764, 897
BstSFI	CTRYAG	2 cut(s)	273, 547
BstSLI	GKGCMC	1 cut(s)	568
BstSNI	TACGTA	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	175, 533, 561
BstX2I	RGATCY	1 cut(s)	451
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	3 cut(s)	263, 424, 597
BtrI	CACGTC	1 cut(s)	799
BtsCI	GGATG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	777, 825, 844
CfoI	GCGC	1 cut(s)	897
Cfr10I	RCCGGY	3 cut(s)	383, 408, 475
Cfr13I	GGNCC	4 cut(s)	363, 381, 473, 901
CpoI	CGGWCCG	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	447, 538, 811
CspAI	ACCGGT	1 cut(s)	383
CspCI	CAANNNNNGTGG	1 cut(s)	901
CspI	CGGWCCG	1 cut(s)	381
CviAII	CATG	1 cut(s)	393
CviQI	GTAC	3 cut(s)	447, 538, 811
DpnI	GATC	3 cut(s)	453, 601, 633
DpnII	GATC	3 cut(s)	451, 599, 631
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
EaeI	YGGCCR	2 cut(s)	261, 595
Eam1104I	CTCTTC	4 cut(s)	147, 199, 610, 654
EarI	CTCTTC	4 cut(s)	147, 199, 610, 654
EciI	GGCGGA	2 cut(s)	353, 394
Ecl136II	GAGCTC	1 cut(s)	620
Eco105I	TACGTA	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	239, 705
Eco24I	GRGCYC	1 cut(s)	622
Eco47I	GGWCC	4 cut(s)	363, 381, 473, 901
Eco53kI	GAGCTC	1 cut(s)	620
Eco72I	CACGTG	2 cut(s)	629, 820
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	901
EcoRI	GAATTC	1 cut(s)	750
EcoRII	CCWGG	2 cut(s)	764, 897
EcoT14I	CCWWGG	2 cut(s)	239, 705
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	2 cut(s)	239, 705
FaeI	CATG	1 cut(s)	396
FaiI	YATR	8 cut(s)	51, 58, 121, 165, 275, 394, 562, 690
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	2 cut(s)	486, 887
FatI	CATG	1 cut(s)	392
Fnu4HI	GCNGC	5 cut(s)	189, 209, 547, 550, 873
FokI	GGATG	1 cut(s)	532
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	5 cut(s)	189, 209, 547, 550, 873
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	896
GluI	GCNGC	5 cut(s)	189, 209, 547, 550, 873
GsuI	CTGGAG	2 cut(s)	533, 834
HaeIII	GGCC	3 cut(s)	263, 424, 597
HapII	CCGG	9 cut(s)	205, 264, 366, 384, 409, 461, 476, 635, 736
HhaI	GCGC	1 cut(s)	897
Hin1II	CATG	1 cut(s)	396
Hin6I	GCGC	1 cut(s)	895
HinP1I	GCGC	1 cut(s)	895
HinfI	GANTC	2 cut(s)	15, 389
HpaII	CCGG	9 cut(s)	205, 264, 366, 384, 409, 461, 476, 635, 736
HphI	GGTGA	5 cut(s)	84, 100, 398, 398, 901
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	20, 27
Hpy188III	TCNNGA	3 cut(s)	218, 461, 677
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4IV	ACGT	5 cut(s)	60, 628, 798, 819, 837
HpyCH4V	TGCA	7 cut(s)	70, 78, 163, 525, 549, 580, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	205, 244, 269
HpySE526I	ACGT	5 cut(s)	60, 628, 798, 819, 837
Hsp92II	CATG	1 cut(s)	396
HspAI	GCGC	1 cut(s)	895
Kpn2I	TCCGGA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	451, 599, 631
LguI	GCTCTTC	2 cut(s)	147, 610
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	3 cut(s)	175, 533, 561
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	5 cut(s)	60, 628, 798, 819, 837
MaeIII	GTNAC	2 cut(s)	647, 790
MalI	GATC	3 cut(s)	453, 601, 633
MboI	GATC	3 cut(s)	451, 599, 631
MboII	GAAGA	7 cut(s)	161, 164, 186, 321, 627, 665, 671
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	568, 622
MluCI	AATT	5 cut(s)	83, 494, 639, 750, 783
MlyI	GAGTC	2 cut(s)	24, 398
MmeI	TCCRAC	2 cut(s)	844, 901
MroI	TCCGGA	1 cut(s)	460
MseI	TTAA	2 cut(s)	65, 786
MslI	CAYNNNNRTG	1 cut(s)	818
MspA1I	CMGCKG	1 cut(s)	546
MspI	CCGG	9 cut(s)	205, 264, 366, 384, 409, 461, 476, 635, 736
MspR9I	CCNGG	3 cut(s)	737, 766, 899
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	766, 899
MwoI	GCNNNNNNNGC	3 cut(s)	205, 244, 269
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	3 cut(s)	451, 599, 631
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	6 cut(s)	132, 212, 232, 474, 567, 903
PciSI	GCTCTTC	2 cut(s)	147, 610
PctI	GAATGC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	771
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	5 cut(s)	190, 210, 548, 551, 874
Ple19I	CGATCG	1 cut(s)	602
PleI	GAGTC	2 cut(s)	23, 397
PmaCI	CACGTG	2 cut(s)	629, 820
PmlI	CACGTG	2 cut(s)	629, 820
PpsI	GAGTC	2 cut(s)	23, 397
Ppu21I	YACGTR	3 cut(s)	61, 629, 820
PpuMI	RGGWCCY	1 cut(s)	901
PshBI	ATTAAT	1 cut(s)	65
Psp124BI	GAGCTC	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	901
Psp6I	CCWGG	2 cut(s)	764, 897
PspCI	CACGTG	2 cut(s)	629, 820
PspGI	CCWGG	2 cut(s)	764, 897
PspN4I	GGNNCC	6 cut(s)	132, 212, 232, 474, 567, 903
PspPI	GGNCC	4 cut(s)	363, 381, 473, 901
PspPPI	RGGWCCY	1 cut(s)	901
PstI	CTGCAG	1 cut(s)	551
PsuI	RGATCY	1 cut(s)	451
PvuI	CGATCG	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	3 cut(s)	448, 539, 812
RsaNI	GTAC	3 cut(s)	447, 538, 811
RseI	CAYNNNNRTG	1 cut(s)	818
Rsr2I	CGGWCCG	1 cut(s)	381
RsrII	CGGWCCG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	622
SapI	GCTCTTC	2 cut(s)	147, 610
SaqAI	TTAA	2 cut(s)	65, 786
SatI	GCNGC	5 cut(s)	189, 209, 547, 550, 873
Sau3AI	GATC	3 cut(s)	451, 599, 631
Sau96I	GGNCC	4 cut(s)	363, 381, 473, 901
SchI	GAGTC	2 cut(s)	24, 398
ScrFI	CCNGG	3 cut(s)	737, 766, 899
SduI	GDGCHC	2 cut(s)	568, 622
SfaNI	GCATC	1 cut(s)	297
SfcI	CTRYAG	2 cut(s)	273, 547
SinI	GGWCC	4 cut(s)	363, 381, 473, 901
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
SnaBI	TACGTA	1 cut(s)	61
Sse9I	AATT	5 cut(s)	83, 494, 639, 750, 783
SsiI	CCGC	5 cut(s)	208, 338, 379, 504, 872
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	3 cut(s)	735, 764, 897
StyI	CCWWGG	2 cut(s)	239, 705
TaaI	ACNGT	1 cut(s)	713
TaiI	ACGT	5 cut(s)	63, 631, 801, 822, 840
TaqI	TCGA	2 cut(s)	284, 602
TasI	AATT	5 cut(s)	83, 494, 639, 750, 783
TatI	WGTACW	1 cut(s)	446
TauI	GCSGC	2 cut(s)	211, 875
Tru1I	TTAA	2 cut(s)	65, 786
Tru9I	TTAA	2 cut(s)	65, 786
TscAI	CASTG	1 cut(s)	582
TseI	GCWGC	3 cut(s)	188, 546, 549
TspDTI	ATGAA	1 cut(s)	50
TspGWI	ACGGA	2 cut(s)	444, 809
TspRI	CASTG	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	771
VpaK11BI	GGWCC	4 cut(s)	363, 381, 473, 901
VspI	ATTAAT	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	83, 750
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.