Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Reverse (-)

31497503 .. 31499182

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG177600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCTGCTTGTTGGTGGGGCATAATGGCAGCTAAAGCTGTGTTGATGAGGGGTGTCAGATGGCAGGTAGGTGATGATCCAGTTCCCTCAAGGCTTCTCTCCCGCCGCTCCAGCCTATGCCTCCTCCATCCACCCGGATTTTCTCTTCAGATTCAACAAGGATACGCCACAGTTCCAAAATTGCCCGATTCCGTCACGCCTCTGACGGTTCCTGATTCTCTTGTGAACCGGTACTGGCCACCTCTTCTTCTATTGGTGGGGGCTTTGAAATGTGCATTGTGGCTTGCTGCTTTGGTACAAATCTGGAATAATGAAGGTATTACTAATGATAAAGGCTTTGAAGCTAATGATCAAGTGCTTGACTTTGATTTGAAATCTGAACCAGCTATAAAGGAAAACAAGGATTCAAGCATGGCAGAGGATTGGTATTTTGGTACCTCACTCATGAAGCTCATGTCAACTCCTCGTCTTCTACGCATAATCGATCGAAGTTCATGTGTGCATTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

19.05

Weight (kDa)

7.66

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	55
Acc65I	GGTACC	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	108
AciI	CCGC	2 cut(s)	103, 106
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	3 cut(s)	233, 297, 436
AgeI	ACCGGT	1 cut(s)	228
AgsI	TTSAA	5 cut(s)	155, 268, 341, 373, 408
AluBI	AGCT	5 cut(s)	32, 38, 344, 386, 451
AluI	AGCT	5 cut(s)	32, 38, 344, 386, 451
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	29, 287
AsiGI	ACCGGT	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	434
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	41, 274
BccI	CCATC	2 cut(s)	54, 135
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	30, 106, 288
BlsI	GCNGC	3 cut(s)	31, 107, 289
Bme1390I	CCNGG	1 cut(s)	135
BmiI	GGNNCC	2 cut(s)	210, 436
BmrFI	CCNGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	135
Bsa29I	ATCGAT	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	80, 239
BseCI	ATCGAT	1 cut(s)	483
BseGI	GGATG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	80, 239
BseRI	GAGGAG	2 cut(s)	113, 453
BseXI	GCAGC	2 cut(s)	41, 274
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	228
BshVI	ATCGAT	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	135, 229
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	76, 349, 484
BspACI	CCGC	2 cut(s)	103, 106
BspANI	GGCC	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	210, 436
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	80, 239
BssAI	RCCGGY	1 cut(s)	228
BssMI	GATC	3 cut(s)	76, 349, 484
Bst4CI	ACNGT	2 cut(s)	172, 208
Bst6I	CTCTTC	2 cut(s)	150, 249
BstC8I	GCNNGC	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	79, 352, 487
BstMBI	GATC	3 cut(s)	76, 349, 484
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 111
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	41, 274
BstV2I	GAAGAC	1 cut(s)	461
Bsu15I	ATCGAT	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	228
ClaI	ATCGAT	1 cut(s)	483
Csp6I	GTAC	3 cut(s)	232, 296, 435
CspAI	ACCGGT	1 cut(s)	228
CviAII	CATG	4 cut(s)	412, 445, 454, 495
CviQI	GTAC	3 cut(s)	232, 296, 435
DpnI	GATC	3 cut(s)	78, 351, 486
DpnII	GATC	3 cut(s)	76, 349, 484
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	150, 249
EarI	CTCTTC	2 cut(s)	150, 249
Eco57I	CTGAAG	1 cut(s)	131
FaeI	CATG	4 cut(s)	415, 448, 457, 498
FaiI	YATR	8 cut(s)	23, 118, 389, 413, 446, 455, 479, 496
FatI	CATG	4 cut(s)	411, 444, 453, 494
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	30, 106, 288
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	30, 106, 288
GluI	GCNGC	3 cut(s)	30, 106, 288
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	238
HapII	CCGG	2 cut(s)	135, 229
Hin1II	CATG	4 cut(s)	415, 448, 457, 498
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	4 cut(s)	151, 188, 215, 404
HpaII	CCGG	2 cut(s)	135, 229
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	226, 459
Hpy188I	TCNGA	4 cut(s)	59, 150, 204, 379
Hpy188III	TCNNGA	3 cut(s)	212, 304, 445
Hpy8I	GTNNAC	2 cut(s)	226, 459
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	172, 208
HpyCH4V	TGCA	2 cut(s)	275, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 111
Hsp92II	CATG	4 cut(s)	415, 448, 457, 498
KpnI	GGTACC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	76, 349, 484
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	50, 93, 124, 148, 220, 225, 242, 289, 396
Lsp1109I	GCAGC	2 cut(s)	41, 274
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	78, 351, 486
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	3 cut(s)	76, 349, 484
MboII	GAAGA	4 cut(s)	137, 236, 239, 461
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	238
MnlI	CCTC	9 cut(s)	42, 97, 131, 134, 210, 252, 412, 448, 474
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	1 cut(s)	511
Msp20I	TGGCCA	1 cut(s)	238
MspI	CCGG	2 cut(s)	135, 229
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	35, 111
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	76, 349, 484
NlaIII	CATG	4 cut(s)	415, 448, 457, 498
NlaIV	GGNNCC	2 cut(s)	210, 436
NmuCI	GTSAC	1 cut(s)	193
PagI	TCATGA	1 cut(s)	444
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	4 cut(s)	151, 188, 215, 404
PinAI	ACCGGT	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	31, 107, 289
Ple19I	CGATCG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	210, 436
PvuI	CGATCG	1 cut(s)	487
RsaI	GTAC	3 cut(s)	233, 297, 436
RsaNI	GTAC	3 cut(s)	232, 296, 435
SaqAI	TTAA	1 cut(s)	511
SatI	GCNGC	3 cut(s)	30, 106, 288
Sau3AI	GATC	3 cut(s)	76, 349, 484
ScrFI	CCNGG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	103, 106
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	172, 208
TaqI	TCGA	2 cut(s)	483, 487
TasI	AATT	1 cut(s)	179
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	4 cut(s)	151, 188, 215, 404
Tru1I	TTAA	1 cut(s)	511
Tru9I	TTAA	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	29, 287
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	3 cut(s)	327, 461, 483
TspGWI	ACGGA	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.