Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007553

Physical Location & Seq

Genomic Coordinates Reverse (-)

59888052 .. 59889169

Gene Structure 1118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGGTGTAGCTGGACGGGCTATGGTGATGTTGGTTCAGAGCTCTCGGTGGAAGATGAGGCGCCTCTGTCTCTTGTCTTCTCAGGCGAAATCGATGGCGGCTTCAAGGAGATCGTGCTGGTGGGTTGGTGTTCTAGGGCAGATCACTAGACCATGGTTGAGGGCTAGATTAATGTGCGATGGCGATACTAGAATTGGCAGCGGTGGGCACAGTGGTTGGCGGTGCACAGCGCCGTGGTCTATAATTGTTGGCTTGCTCTGGTATCTTCAGGCGAAGTGTGGTGGTCTGCTATTGGAGGGGATGTGCAAAATTTCTTCATACTACGGCGGCGGCCTTGCCTTTGGGCAAGGCTATGTAGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

10.25

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0007553)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0439061 RchiOBHm_Chr5g0047911 RchiOBHm_Chr6g0264791
rosa_laevigata	RLG00000000810 RLG00000021002
rosa_multiflora	Rmu_sc0005631.1_g000015 Rmu_sc0009313.1_g000010 Rmu_sc0027765.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033810 Rroxscaffold_1G00048710 Rroxscaffold_6G00411730 Rroxscaffold_7G00170630
rosa_samantha	Rh1CG263500 Rh2AG165500 Rh2AG302200 Rh2BG172800 Rh2CG442100 Rh2DG061100 Rh2DG171100 Rh2DG326200 Rh4BG177600 Rh5CG486200 Rh5DG271800 Rh5DG336200 Rh7BG323100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AciI	CCGC	5 cut(s)	98, 201, 220, 327, 330
AcsI	RAATTY	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	2 cut(s)	11, 42
AluI	AGCT	2 cut(s)	11, 42
Alw21I	GWGCWC	2 cut(s)	44, 227
Alw26I	GTCTC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	309
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	63, 232
AsuHPI	GGTGA	1 cut(s)	37
BaeGI	GKGCMC	2 cut(s)	210, 227
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	2 cut(s)	44, 227
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	2 cut(s)	88, 173
BceAI	ACGGC	2 cut(s)	217, 340
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	4 cut(s)	134, 147, 165, 189
BfoI	RGCGCY	2 cut(s)	64, 233
BisI	GCNGC	4 cut(s)	99, 199, 328, 331
BlsI	GCNGC	4 cut(s)	100, 200, 329, 332
BmiI	GGNNCC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	152, 233
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	152, 233
BseGI	GGATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	95
BseSI	GKGCMC	2 cut(s)	210, 227
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	60
BshVI	ATCGAT	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	44, 227
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	44, 210, 227
Bsp143I	GATC	2 cut(s)	110, 141
Bsp19I	CCATGG	1 cut(s)	152
BspACI	CCGC	5 cut(s)	98, 201, 220, 327, 330
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	152, 233
BssMI	GATC	2 cut(s)	110, 141
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	2 cut(s)	152, 233
BstF5I	GGATG	1 cut(s)	306
BstH2I	RGCGCY	2 cut(s)	64, 233
BstHHI	GCGC	2 cut(s)	63, 232
BstKTI	GATC	2 cut(s)	113, 144
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	110, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstSLI	GKGCMC	2 cut(s)	210, 227
BstV1I	GCAGC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	92
BtgI	CCRYGG	2 cut(s)	152, 233
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	254
CfoI	GCGC	2 cut(s)	63, 232
ClaI	ATCGAT	1 cut(s)	92
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	8 cut(s)	11, 20, 42, 101, 164, 252, 333, 351
CviKI_1	RGCY	8 cut(s)	11, 20, 42, 101, 164, 252, 333, 351
DdeI	CTNAG	1 cut(s)	81
DinI	GGCGCC	1 cut(s)	62
DpnI	GATC	2 cut(s)	112, 143
DpnII	GATC	2 cut(s)	110, 141
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	44
EgeI	GGCGCC	1 cut(s)	62
EheI	GGCGCC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	156
FaiI	YATR	6 cut(s)	23, 154, 242, 319, 354, 362
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	99, 199, 328, 331
FokI	GGATG	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	99, 199, 328, 331
FspBI	CTAG	4 cut(s)	134, 147, 165, 189
GlaI	GCGC	2 cut(s)	62, 231
GluI	GCNGC	4 cut(s)	99, 199, 328, 331
HaeII	RGCGCY	2 cut(s)	64, 233
HaeIII	GGCC	1 cut(s)	333
HhaI	GCGC	2 cut(s)	63, 232
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	2 cut(s)	61, 230
HinP1I	GCGC	2 cut(s)	61, 230
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	225, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	2 cut(s)	61, 230
KasI	GGCGCC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	110, 141
LpnPI	CCDG	4 cut(s)	68, 103, 244, 254
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	4 cut(s)	134, 147, 165, 189
MalI	GATC	2 cut(s)	112, 143
MboI	GATC	2 cut(s)	110, 141
MboII	GAAGA	4 cut(s)	64, 69, 257, 306
MhlI	GDGCHC	3 cut(s)	44, 210, 227
MluCI	AATT	3 cut(s)	192, 243, 309
Mly113I	GGCGCC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	51, 74, 153, 289
MseI	TTAA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	17
NarI	GGCGCC	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	110, 141
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	62
PkrI	GCNGC	4 cut(s)	100, 200, 329, 332
PluTI	GGCGCC	1 cut(s)	64
PshBI	ATTAAT	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	4 cut(s)	99, 199, 328, 331
Sau3AI	GATC	2 cut(s)	110, 141
SduI	GDGCHC	3 cut(s)	44, 210, 227
SetI	ASST	2 cut(s)	13, 44
SfoI	GGCGCC	1 cut(s)	62
Sse9I	AATT	3 cut(s)	192, 243, 309
SsiI	CCGC	5 cut(s)	98, 201, 220, 327, 330
SspDI	GGCGCC	1 cut(s)	60
SspMI	CTAG	4 cut(s)	134, 147, 165, 189
SstI	GAGCTC	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	192, 243, 309
TauI	GCSGC	3 cut(s)	101, 330, 333
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	223
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	1 cut(s)	309
XspI	CTAG	4 cut(s)	134, 147, 165, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.