RLG00000021002

Mitochondrial pyruvate carrier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007553
Physical Location & Seq
Reverse (-)
70977663 .. 70983926
6264 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021002

Sequence Viewer

Length: 1173 bp
ATGTCGTCACTGGAGTTTGGAAAGATTAGGATTATAATATCCCAATCCACCGAAAACTGCTCCTTAAATCAGTGCCTGCAACCTCCAAATCTGGAATCTCACGCCGACTTCTCTGCTGCAATCTCCAAGTCTGACATTCCCAAAAAGCTTTATACTTGCAATACAAAGCAAACACCTAGTCTCTCGTCACTCTTGTCCTCGGCACCTCACGACGATGATGACTCCTTGCCTAGTTGGCGTGAGATGGGTGTAGCCGGACGGGCTATGGCGAAATTGATGGCGGAATCAAGGAGATCGTGGTGGTGGGTTGGTGTTCTATGGCAGCTCGCTAGACTATGGTTGAGGGTTCTTCAATATCTGAGTCAGATCAGGTCAATCTCTATGATTTTGGGTGGATCTAGGTTTGGATTATTGGGGACAATCTTTAAGGGCTGGATTAATGTGCAAAGGCGATACCGGAATTGGCAGCGGTGGGCACGATGGTTGGCGGTACATAGCGCCGTGGTCTATAATTGTTGGCTTGCTCTGGTATCTTCAGGCGATGTGTGGTGGTATGTTATTGAAGGGGATGTGCAAAAGTTTTTGGTACTACGGCGGCGGCCTTGCCTAAGGATTTGTGGTTATGTGATTATGGGCACCAACTTCACTCTGTGTCGTTCTTCTTGGCGGGAGTCGGAGCTTTGGTTGTGGAAGATGAAGGCTAACGCCGGCATCGACTCCTGCGGCTTCTTACTTCTTTATTGGCTCGCCGCACTTGTCCATTGTACGTTCCAGTCAGAGAGAGCTTGCTACCGGGCCAGAACTGATAGCAGATCATCAGATTATAATTCCATGGCAAATTCTAAGCTGCAAGCGCTGTGGAATCACCCCGCCGGCCCTAAAACTATTCATTTCTGGGCTCCAACTTTCAAATGGGGAATAACCATCGCAAATATTCTCGACTCCTCTAAACCACCTGACCAAGTTTCCTATGCTCAACAAACAGCGATTATGGGCAGTGGATTTATATGGACAAGATGGGGCACAGTAATTACCCCAAAGAACTGGAATCTAGTCAGCGTCAATTTTGGGATGGCTGTCACTGCCATGTTTCAACTCGCACGTAAAACTCAGCATGACTACTTATCTTCCGATGACCAACAAGCTGCTTCAGAGAGCATTGATGACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPC

Protein Analysis

391

Amino Acids

44.62

Weight (kDa)

9.42

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MPC PF03650 283 - 388 1.7e-36 Mitochondrial pyruvate carriers
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 35, 825
AccB1I GGYRCC 2 cut(s) 202, 635
AciI CCGC 9 cut(s) 281, 469, 488, 595, 598, 667, 723, 750, 870
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 838
AcuI CTGAAG 2 cut(s) 519, 1134
AdeI CACNNNGTG 1 cut(s) 651
AfaI GTAC 3 cut(s) 492, 588, 766
AfeI AGCGCT 1 cut(s) 855
AgsI TTSAA 4 cut(s) 353, 563, 910, 1094
AluBI AGCT 6 cut(s) 148, 325, 679, 785, 847, 1145
AluI AGCT 6 cut(s) 148, 325, 679, 785, 847, 1145
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 76
Aor51HI AGCGCT 1 cut(s) 855
AoxI GGCC 3 cut(s) 599, 795, 874
ApeKI GCWGC 5 cut(s) 116, 322, 466, 847, 1145
ApoI RAATTY 1 cut(s) 838
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AseI ATTAAT 1 cut(s) 438
AspLEI GCGC 2 cut(s) 500, 856
AspS9I GGNCC 2 cut(s) 795, 875
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 1 cut(s) 857
AxyI CCTNAGG 1 cut(s) 608
BaeGI GKGCMC 3 cut(s) 478, 638, 1025
BanI GGYRCC 2 cut(s) 202, 635
BanII GRGCYC 1 cut(s) 901
BbvI GCAGC 5 cut(s) 103, 334, 478, 834, 1132
BccI CCATC 6 cut(s) 238, 271, 474, 932, 1011, 1066
BceAI ACGGC 2 cut(s) 485, 608
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 5 cut(s) 177, 231, 330, 399, 1052
BfoI RGCGCY 2 cut(s) 501, 857
BglI GCCNNNNNGGC 2 cut(s) 235, 260
BisI GCNGC 9 cut(s) 117, 323, 467, 596, 599, 724, 750, 848, 1146
BlsI GCNGC 9 cut(s) 118, 324, 468, 597, 600, 725, 751, 849, 1147
Bme1390I CCNGG 1 cut(s) 794
BmgT120I GGNCC 2 cut(s) 795, 875
BmiI GGNNCC 3 cut(s) 204, 637, 900
BmrFI CCNGG 1 cut(s) 794
BmsI GCATC 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 794
BsaAI YACGTR 1 cut(s) 1103
BsaJI CCNNGG 3 cut(s) 198, 501, 831
BsaWI WCCGGW 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bse118I RCCGGY 2 cut(s) 707, 872
Bse1I ACTGG 3 cut(s) 15, 772, 1049
Bse21I CCTNAGG 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 198, 501, 831
BseGI GGATG 2 cut(s) 574, 1077
BseMII CTCAG 2 cut(s) 350, 1124
BseNI ACTGG 3 cut(s) 15, 772, 1049
BseRI GAGGAG 1 cut(s) 934
BseSI GKGCMC 3 cut(s) 478, 638, 1025
BseXI GCAGC 5 cut(s) 103, 334, 478, 834, 1132
BshFI GGCC 3 cut(s) 601, 797, 876
BshNI GGYRCC 2 cut(s) 202, 635
BsiSI CCGG 5 cut(s) 255, 457, 708, 793, 873
BslFI GGGAC 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 3 cut(s) 601, 797, 876
Bsp1286I GDGCHC 4 cut(s) 478, 638, 901, 1025
Bsp143I GATC 4 cut(s) 293, 366, 395, 812
Bsp19I CCATGG 1 cut(s) 831
BspACI CCGC 9 cut(s) 281, 469, 488, 595, 598, 667, 723, 750, 870
BspANI GGCC 3 cut(s) 601, 797, 876
BspCNI CTCAG 2 cut(s) 351, 1123
BspLI GGNNCC 3 cut(s) 204, 637, 900
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 2 cut(s) 202, 635
BsrFI RCCGGY 2 cut(s) 707, 872
BsrI ACTGG 3 cut(s) 15, 772, 1049
BssAI RCCGGY 2 cut(s) 707, 872
BssECI CCNNGG 3 cut(s) 198, 501, 831
BssMI GATC 4 cut(s) 293, 366, 395, 812
BssT1I CCWWGG 1 cut(s) 831
Bst4CI ACNGT 1 cut(s) 1027
BstBAI YACGTR 1 cut(s) 1103
BstC8I GCNNGC 8 cut(s) 77, 327, 522, 709, 747, 787, 852, 874
BstDEI CTNAG 4 cut(s) 359, 608, 843, 1110
BstDSI CCRYGG 2 cut(s) 501, 831
BstF5I GGATG 2 cut(s) 574, 1077
BstH2I RGCGCY 2 cut(s) 501, 857
BstHHI GCGC 2 cut(s) 500, 856
BstKTI GATC 4 cut(s) 296, 369, 398, 815
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 4 cut(s) 293, 366, 395, 812
BstMWI GCNNNNNNNGC 4 cut(s) 235, 260, 853, 1082
BstSCI CCNGG 1 cut(s) 792
BstSLI GKGCMC 3 cut(s) 478, 638, 1025
BstV1I GCAGC 5 cut(s) 103, 334, 478, 834, 1132
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 1044
BstYI RGATCY 1 cut(s) 395
Bsu36I CCTNAGG 1 cut(s) 608
BsuRI GGCC 3 cut(s) 601, 797, 876
BtgI CCRYGG 2 cut(s) 501, 831
BtgZI GCGATG 2 cut(s) 555, 910
BtsCI GGATG 2 cut(s) 574, 1077
BtsI GCAGTG 2 cut(s) 1003, 1080
BtsIMutI CAGTG 4 cut(s) 8, 77, 1003, 1080
Cac8I GCNNGC 8 cut(s) 77, 327, 522, 709, 747, 787, 852, 874
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 2 cut(s) 500, 856
Cfr10I RCCGGY 2 cut(s) 707, 872
Cfr13I GGNCC 2 cut(s) 795, 875
CseI GACGC 1 cut(s) 1048
Csp6I GTAC 3 cut(s) 491, 587, 765
CspCI CAANNNNNGTGG 2 cut(s) 839, 874
CviAII CATG 3 cut(s) 832, 1087, 1115
CviQI GTAC 3 cut(s) 491, 587, 765
DdeI CTNAG 4 cut(s) 359, 608, 843, 1110
DpnI GATC 4 cut(s) 295, 368, 397, 814
DpnII GATC 4 cut(s) 293, 366, 395, 812
DraIII CACNNNGTG 1 cut(s) 651
EciI GGCGGA 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 831
Eco24I GRGCYC 1 cut(s) 901
Eco47III AGCGCT 1 cut(s) 855
Eco57I CTGAAG 2 cut(s) 519, 1134
Eco81I CCTNAGG 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 831
EcoT38I GRGCYC 1 cut(s) 901
ErhI CCWWGG 1 cut(s) 831
FaeI CATG 3 cut(s) 835, 1090, 1118
FaqI GGGAC 1 cut(s) 430
FatI CATG 3 cut(s) 831, 1086, 1114
FauI CCCGC 2 cut(s) 660, 877
Fnu4HI GCNGC 9 cut(s) 117, 323, 467, 596, 599, 724, 750, 848, 1146
FokI GGATG 2 cut(s) 581, 1084
FriOI GRGCYC 1 cut(s) 901
Fsp4HI GCNGC 9 cut(s) 117, 323, 467, 596, 599, 724, 750, 848, 1146
FspBI CTAG 5 cut(s) 177, 231, 330, 399, 1052
GlaI GCGC 2 cut(s) 499, 855
GluI GCNGC 9 cut(s) 117, 323, 467, 596, 599, 724, 750, 848, 1146
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 2 cut(s) 501, 857
HaeIII GGCC 3 cut(s) 601, 797, 876
HapII CCGG 5 cut(s) 255, 457, 708, 793, 873
HgaI GACGC 1 cut(s) 1048
HhaI GCGC 2 cut(s) 500, 856
Hin1II CATG 3 cut(s) 835, 1090, 1118
Hin6I GCGC 2 cut(s) 498, 854
HinP1I GCGC 2 cut(s) 498, 854
HindIII AAGCTT 1 cut(s) 146
HinfI GANTC 9 cut(s) 95, 221, 284, 361, 671, 716, 862, 941, 1048
HpaII CCGG 5 cut(s) 255, 457, 708, 793, 873
HphI GGTGA 1 cut(s) 857
Hpy188I TCNGA 8 cut(s) 133, 360, 366, 676, 778, 820, 1132, 1153
Hpy188III TCNNGA 3 cut(s) 92, 209, 938
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 557, 691
HpyCH4III ACNGT 1 cut(s) 1027
HpyCH4IV ACGT 2 cut(s) 767, 1102
HpyCH4V TGCA 6 cut(s) 79, 119, 159, 445, 574, 850
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 260, 853, 1082
HpyF3I CTNAG 4 cut(s) 359, 608, 843, 1110
HpySE526I ACGT 2 cut(s) 767, 1102
Hsp92II CATG 3 cut(s) 835, 1090, 1118
HspAI GCGC 2 cut(s) 498, 854
KroI GCCGGC 2 cut(s) 707, 872
KroNI GCCGGC 2 cut(s) 709, 874
Kzo9I GATC 4 cut(s) 293, 366, 395, 812
LmnI GCTCC 3 cut(s) 65, 676, 904
Lsp1109I GCAGC 5 cut(s) 103, 334, 478, 834, 1132
LweI GCATC 1 cut(s) 720
MaeI CTAG 5 cut(s) 177, 231, 330, 399, 1052
MaeII ACGT 2 cut(s) 767, 1102
MaeIII GTNAC 3 cut(s) 6, 186, 1078
MalI GATC 4 cut(s) 295, 368, 397, 814
MboI GATC 4 cut(s) 293, 366, 395, 812
MboII GAAGA 5 cut(s) 341, 525, 651, 703, 1119
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 4 cut(s) 478, 638, 901, 1025
MluCI AATT 7 cut(s) 272, 460, 511, 826, 838, 1029, 1063
MlyI GAGTC 5 cut(s) 215, 370, 680, 710, 935
MmeI TCCRAC 2 cut(s) 654, 926
MnlI CCTC 5 cut(s) 93, 208, 216, 336, 955
MroNI GCCGGC 2 cut(s) 707, 872
MseI TTAA 3 cut(s) 65, 426, 438
MslI CAYNNNNRTG 2 cut(s) 213, 1085
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 5 cut(s) 255, 457, 708, 793, 873
MspR9I CCNGG 1 cut(s) 794
MwoI GCNNNNNNNGC 4 cut(s) 235, 260, 853, 1082
NaeI GCCGGC 2 cut(s) 709, 874
NciI CCSGG 1 cut(s) 794
NcoI CCATGG 1 cut(s) 831
NdeII GATC 4 cut(s) 293, 366, 395, 812
NgoMIV GCCGGC 2 cut(s) 707, 872
NlaIII CATG 3 cut(s) 835, 1090, 1118
NlaIV GGNNCC 3 cut(s) 204, 637, 900
NmeAIII GCCGAG 1 cut(s) 179
NmuCI GTSAC 3 cut(s) 6, 186, 1078
PcsI WCGNNNNNNNCGW 1 cut(s) 711
PdiI GCCGGC 2 cut(s) 709, 874
PfeI GAWTC 4 cut(s) 95, 284, 862, 1048
PkrI GCNGC 9 cut(s) 118, 324, 468, 597, 600, 725, 751, 849, 1147
PleI GAGTC 5 cut(s) 215, 369, 679, 710, 935
PpsI GAGTC 5 cut(s) 215, 369, 679, 710, 935
Ppu21I YACGTR 1 cut(s) 1103
PshBI ATTAAT 1 cut(s) 438
PsiI TTATAA 2 cut(s) 35, 825
PspN4I GGNNCC 3 cut(s) 204, 637, 900
PspPI GGNCC 2 cut(s) 795, 875
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 3 cut(s) 492, 588, 766
RsaNI GTAC 3 cut(s) 491, 587, 765
RseI CAYNNNNRTG 2 cut(s) 213, 1085
SaqAI TTAA 3 cut(s) 65, 426, 438
SatI GCNGC 9 cut(s) 117, 323, 467, 596, 599, 724, 750, 848, 1146
Sau3AI GATC 4 cut(s) 293, 366, 395, 812
Sau96I GGNCC 2 cut(s) 795, 875
SchI GAGTC 5 cut(s) 215, 370, 680, 710, 935
ScrFI CCNGG 1 cut(s) 794
SduI GDGCHC 4 cut(s) 478, 638, 901, 1025
SfaNI GCATC 1 cut(s) 720
SmiMI CAYNNNNRTG 2 cut(s) 213, 1085
Sse9I AATT 7 cut(s) 272, 460, 511, 826, 838, 1029, 1063
SsiI CCGC 9 cut(s) 281, 469, 488, 595, 598, 667, 723, 750, 870
SspI AATATT 1 cut(s) 934
SspMI CTAG 5 cut(s) 177, 231, 330, 399, 1052
StyD4I CCNGG 1 cut(s) 792
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 1 cut(s) 1027
TaiI ACGT 2 cut(s) 770, 1105
TaqI TCGA 2 cut(s) 714, 939
TasI AATT 7 cut(s) 272, 460, 511, 826, 838, 1029, 1063
TauI GCSGC 4 cut(s) 598, 601, 726, 752
TfiI GAWTC 4 cut(s) 95, 284, 862, 1048
Tru1I TTAA 3 cut(s) 65, 426, 438
Tru9I TTAA 3 cut(s) 65, 426, 438
TscAI CASTG 4 cut(s) 15, 77, 1003, 1087
TseFI GTSAC 3 cut(s) 6, 186, 1078
TseI GCWGC 5 cut(s) 116, 322, 466, 847, 1145
Tsp45I GTSAC 3 cut(s) 6, 186, 1078
TspDTI ATGAA 2 cut(s) 710, 878
TspRI CASTG 4 cut(s) 15, 77, 1003, 1087
VspI ATTAAT 1 cut(s) 438
XapI RAATTY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 909
XspI CTAG 5 cut(s) 177, 231, 330, 399, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.