Rh1CG263500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
52796844 .. 52797369
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG263500.1

Sequence Viewer

Length: 267 bp
ATGAAGTGCAATGCAACATCCACCTTCTCAAGCTCATTCGTTTATGTGACTTCTTCACCTTCACATGTTACTTTTCTGGGCTACACCAGCTTTGAAGCTAATGATCAAGTGCTTGACTTTGATTTGAAATCTGAACCAGCTATAAAGGAAAACAAGGATTCAAACATGGCAGAGGTATGGTATTTTGGAACCTCACTCATGAAGCTCATGTCAACTCCCCGTCTTCTACTGATAATCGATCGAAGTTCATGTGTGCATTCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.9

Weight (kDa)

5.49

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 3 cut(s) 95, 127, 162
AluBI AGCT 5 cut(s) 33, 90, 98, 140, 205
AluI AGCT 5 cut(s) 33, 90, 98, 140, 205
AsuHPI GGTGA 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 215
BclI TGATCA 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 237
BseGI GGATG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 241
BsmI GAATGC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 103, 238
BspDI ATCGAT 1 cut(s) 237
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 16
BssMI GATC 2 cut(s) 103, 238
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 2 cut(s) 106, 241
BstMBI GATC 2 cut(s) 103, 238
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNSI RCATGY 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 215
Bsu15I ATCGAT 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 1 cut(s) 17
CciI TCATGA 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 237
CviAII CATG 5 cut(s) 65, 166, 199, 208, 249
CviJI RGCY 6 cut(s) 33, 81, 90, 98, 140, 205
CviKI_1 RGCY 6 cut(s) 33, 81, 90, 98, 140, 205
DpnI GATC 2 cut(s) 105, 240
DpnII GATC 2 cut(s) 103, 238
FaeI CATG 5 cut(s) 68, 169, 202, 211, 252
FaiI YATR 8 cut(s) 45, 66, 143, 167, 178, 200, 209, 250
FatI CATG 5 cut(s) 64, 165, 198, 207, 248
FbaI TGATCA 1 cut(s) 103
FokI GGATG 1 cut(s) 4
Hin1II CATG 5 cut(s) 68, 169, 202, 211, 252
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 34, 69
HpyCH4V TGCA 3 cut(s) 9, 14, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 68, 169, 202, 211, 252
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 238
LpnPI CCDG 3 cut(s) 62, 100, 150
MaeIII GTNAC 2 cut(s) 46, 67
MalI GATC 2 cut(s) 105, 240
MboI GATC 2 cut(s) 103, 238
MboII GAAGA 2 cut(s) 45, 215
MnlI CCTC 2 cut(s) 166, 202
MseI TTAA 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 87
NdeII GATC 2 cut(s) 103, 238
NlaIII CATG 5 cut(s) 68, 169, 202, 211, 252
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 68
PagI TCATGA 1 cut(s) 198
PciI ACATGT 1 cut(s) 64
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 158
Ple19I CGATCG 1 cut(s) 241
PscI ACATGT 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 190
PvuI CGATCG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 265
Sau3AI GATC 2 cut(s) 103, 238
SetI ASST 9 cut(s) 26, 35, 61, 92, 100, 142, 177, 194, 207
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
TaqI TCGA 2 cut(s) 237, 241
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 17, 215, 237
XceI RCATGY 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.