Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009727

Physical Location & Seq

Genomic Coordinates Forward (+)

66270168 .. 66270637

Gene Structure 470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCAATGGACAACTATGTTTCCCACTTGCAAAAGCAGAGTTTCATAAGCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGCATCTGGATATCTTTTGCCAAGCTTGCATTCAGATGCAATATTTGAAAGTTCAGGGGTCAGCTTCTTTTGTGATCTGAATGATAACATTCTATTACTTGGAAATTCTTTTTATGCTTGGCTTGTTACATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.05

Weight (kDa)

5.76

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At1g61900	PF26584	2 - 46	1.1e-21	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009727)

Species	Orthologous Gene IDs
malus_domestica	MD05G1345000.v1.1
rosa_chinensis	RchiOBHm_Chr5g0060961
rosa_laevigata	RLG00000028318 RLG00000032438
rosa_multiflora	Rmu_co8107644.1_g000001 Rmu_co8229399.1_g000001 Rmu_sc0000316.1_g000006 Rmu_sc0000640.1_g000014 Rmu_sc0007627.1_g000004 Rmu_sc0010917.1_g000006
rosa_roxburghii	Rroxscaffold_152G00434550 Rroxscaffold_2G00100700 Rroxscaffold_2G00103070 Rroxscaffold_5G00366020
rosa_samantha	Rh4CG162900 Rh5AG329700 Rh5AG398100 Rh5BG410900 Rh5CG436000 Rh5DG425300 Rh5DG425400 Rh6DG389100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	164, 212
AjuI	GAANNNNNNNTTGG	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	62, 189, 228
AluI	AGCT	3 cut(s)	62, 189, 228
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	86, 176, 190
BmuI	ACTGGG	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	60, 191
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	60, 191
CviJI	RGCY	6 cut(s)	62, 129, 144, 189, 228, 286
CviKI_1	RGCY	6 cut(s)	62, 129, 144, 189, 228, 286
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco32I	GATATC	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	176
FaiI	YATR	6 cut(s)	18, 47, 126, 133, 279, 295
Fnu4HI	GCNGC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HindIII	AAGCTT	2 cut(s)	60, 187
Hpy188I	TCNGA	2 cut(s)	199, 243
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	31, 58, 77, 193, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	68, 156, 204
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	3 cut(s)	86, 176, 190
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MluCI	AATT	1 cut(s)	268
MnlI	CCTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	95, 140
MslI	CAYNNNNRTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	95, 140
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	238
SetI	ASST	3 cut(s)	64, 191, 230
SfaNI	GCATC	3 cut(s)	86, 176, 190
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	268
SspI	AATATT	2 cut(s)	109, 207
TasI	AATT	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	95, 140
Tru9I	TTAA	2 cut(s)	95, 140
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	34, 104
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.