Rh5DG425300

GPI-anchored protein At1g61900-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009727
Physical Location & Seq
Forward (+)
67881393 .. 67885128
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG425300.1

Sequence Viewer

Length: 330 bp
ATGTTCTTCAACCTGGATCCAATCTATTACGTTTGTCCTCTGGTCTTCCCCAATATGAAACATGTTGCACTTGGCTATGGGGATGAGATAAGCAACCAAATAGCTTGCTGTACGGCAATGGACAACTATGTTTCCCGCTTGCAAAAGCAGAGTTTCATAAGCAACTTGCAAGCTTTGGATTGTGCTGCATCACTGGGAATGAAGTTAAGAAAATCAAATATTACCAAAGATGTGTATAGCCTATGTCATTTAAGCCTCAAGGATTTCTCCCTTCAAGCATCTGGATATCTTTTGCCAAGCTTGCATTCAGACGCAATATTTGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.16

Weight (kDa)

6.23

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At1g61900 PF26584 11 - 83 7.6e-34 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 136
AclWI GGATC 2 cut(s) 11, 24
AfaI GTAC 1 cut(s) 112
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 3 cut(s) 10, 275, 323
AjnI CCWGG 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AluBI AGCT 3 cut(s) 104, 173, 300
AluI AGCT 3 cut(s) 104, 173, 300
AlwI GGATC 2 cut(s) 11, 24
ApeKI GCWGC 1 cut(s) 185
ArsI GACNNNNNNTTYG 1 cut(s) 302
BamHI GGATCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 172
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 14
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 197, 287
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 2 cut(s) 11, 24
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 1 cut(s) 198
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 106, 140, 171, 302
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 4 cut(s) 106, 140, 171, 302
CseI GACGC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 62
CviJI RGCY 6 cut(s) 75, 104, 173, 240, 255, 300
CviKI_1 RGCY 6 cut(s) 75, 104, 173, 240, 255, 300
CviQI GTAC 1 cut(s) 111
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 12
EcoRV GATATC 1 cut(s) 287
FaeI CATG 1 cut(s) 65
FaiI YATR 7 cut(s) 56, 63, 78, 129, 158, 237, 244
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
HgaI GACGC 1 cut(s) 320
Hin1II CATG 1 cut(s) 65
HindIII AAGCTT 2 cut(s) 171, 298
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 282
HpyAV CCTTC 2 cut(s) 281, 317
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 5 cut(s) 68, 142, 169, 188, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 4 cut(s) 26, 26, 179, 267
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 2 cut(s) 197, 287
MaeII ACGT 1 cut(s) 30
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 16
MnlI CCTC 2 cut(s) 48, 266
MseI TTAA 2 cut(s) 206, 251
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 18
NspI RCATGY 1 cut(s) 65
PciI ACATGT 1 cut(s) 61
PctI GAATGC 1 cut(s) 304
PkrI GCNGC 1 cut(s) 187
PscI ACATGT 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 206, 251
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 16
ScrFI CCNGG 1 cut(s) 14
SetI ASST 6 cut(s) 15, 33, 106, 175, 302, 328
SfaNI GCATC 2 cut(s) 197, 287
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 1 cut(s) 136
SspI AATATT 2 cut(s) 220, 318
StyD4I CCNGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 33
Tru1I TTAA 2 cut(s) 206, 251
Tru9I TTAA 2 cut(s) 206, 251
TscAI CASTG 1 cut(s) 198
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 3 cut(s) 71, 145, 215
TspRI CASTG 1 cut(s) 198
XceI RCATGY 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.